RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, human

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPHP4-208	ENST00000478423	KLK3	P07288	261 aa	Predicted RBP	13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	ZNF3	P17036	446 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	ELK4	P28324	431 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	ARFIP1	P53367	373 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	NNAT	Q16517	81 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	TMEM35A	Q53FP2	167 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	SLC35F1	Q5T1Q4	408 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	ZNF773	Q6PK81	442 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	RSPO2	Q6UXX9	243 aa	Predicted RBP	13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	CSNK1A1L	Q8N752	337 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	GOLM1	Q8NBJ4	401 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	OR2A12	Q8NGT7	310 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	MAL2	Q969L2	176 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	BHLHE41	Q9C0J9	482 aa	Predicted RBP	13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	EHD1	Q9H4M9	534 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	ANKRA2	Q9H9E1	313 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	PRTFDC1	Q9NRG1	225 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	SAGE1	Q9NXZ1	904 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	PCDHGB7	Q9Y5F8	929 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423		A0A1W2PPW3	197 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	PGF	P49763	221 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	SIM1	P81133	766 aa	Predicted RBP	13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	ENPP6	Q6UWR7	440 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	USP53	Q70EK8	1073 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	USP43	Q70EL4	1123 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	KLHL36	Q8N4N3	616 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	RNASE11	Q8TAA1	199 aa	Known RBP	13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	MOAP1	Q96BY2	351 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	SH3YL1	Q96HL8	342 aa	Predicted RBP	13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	ACTL8	Q9H568	366 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	TRPV5	Q9NQA5	729 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	MALT1	Q9UDY8	824 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	CA14	Q9ULX7	337 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	IGLV3-10	A0A075B6K4	115 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	EMC8	O43402	210 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	AKAP8	O43823	692 aa	Known RBP	13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	ABLIM3	O94929	683 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	REN	P00797	406 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	DRD2	P14416	443 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	GPX3	P22352	226 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	GNAL	P38405	381 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	UAP1L1	Q3KQV9	507 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	ARL9	Q6T311	187 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	OR5M3	Q8NGP4	307 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	C16orf78	Q8WTQ4	265 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	CWH43	Q9H720	699 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	VAPA	Q9P0L0	249 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	LIPT1	Q9Y234	373 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	NME7	Q9Y5B8	376 aa		13.61	□□□□□ -0.23
NPHP4-208	ENST00000478423	TAF4	O00268	1085 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	THEGL	P0DJG4	465 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	HNRNPA2B1	P22626	353 aa	Known RBP	13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	PDHA2	P29803	388 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	GABRA3	P34903	492 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	POU6F2	P78424	691 aa	Predicted RBP	13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	GINS1	Q14691	196 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	TNFAIP8L3	Q5GJ75	292 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	C6orf141	Q5SZD1	244 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	ZCCHC12	Q6PEW1	402 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	TMEM107	Q6UX40	140 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	IKBIP	Q70UQ0	350 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	GALNT7	Q86SF2	657 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	ZNF761	Q86XN6	746 aa	Predicted RBP	13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	SLC22A15	Q8IZD6	547 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	DTWD1	Q8N5C7	304 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	ZDHHC12	Q96GR4	267 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	TAS2R7	Q9NYW3	318 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	CDK5RAP2	Q96SN8	1893 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423		H0YAE9	185 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	RASAL1	O95294	804 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	RLN1	P04808	185 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	HMGA1	P17096	107 aa	Known RBP	13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	SDC1	P18827	310 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	ZXDB	P98169	803 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	RCAN2	Q14206	197 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	FLYWCH1	Q4VC44	716 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	CTSL3P	Q5NE16	218 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	UBE2J2	Q8N2K1	259 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	BBS10	Q8TAM1	723 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	ZSWIM3	Q96MP5	696 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	TGM7	Q96PF1	710 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	ITPA	Q9BY32	194 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	OR51I1	Q9H343	314 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	KCNK12	Q9HB15	430 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	PDE7B	Q9NP56	450 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	ZNF222	Q9UK12	451 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	SMCHD1	A6NHR9	2005 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	FABP12	A6NFH5	140 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	ACOX3	O15254	700 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	RPS15A	P62244	130 aa	Known RBP	13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	CBX3	Q13185	183 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	MBTPS1	Q14703	1052 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	METTL2B	Q6P1Q9	378 aa	Known RBP	13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	RFLNA	Q6ZTI6	216 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	RTL10	Q7L3V2	364 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	C12orf43	Q96C57	262 aa	Known RBP	13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	CRELD1	Q96HD1	420 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	ZFP3	Q96NJ6	502 aa		13.6	□□□□□ -0.23
NPHP4-208	ENST00000478423	INPP5K	Q9BT40	448 aa		13.6	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 41 ms