RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 CYTH4Q9UIA0 394 aa4.28□□□□□ -1.72
VPS50-214ENST00000477935 FAF1Q9UNN5 650 aaPredicted RBP4.28□□□□□ -1.72
VPS50-214ENST00000477935 TP53TG5Q9Y2B4 290 aa4.28□□□□□ -1.72
VPS50-214ENST00000477935 R3HDM2Q9Y2K5 976 aaKnown RBP4.28□□□□□ -1.72
VPS50-214ENST00000477935 CSPG4Q6UVK1 2322 aa4.28□□□□□ -1.72
VPS50-214ENST00000477935 CITO14578 2027 aa4.28□□□□□ -1.73
VPS50-214ENST00000477935 COL6A5A8TX70 2615 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 ATRQ13535 2644 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 ANAPC1Q9H1A4 1944 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 JMJD1CQ15652 2540 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 EIF3DO15371 548 aaKnown RBP eCLIP4.27□□□□□ -1.73
VPS50-214ENST00000477935 NEMFO60524 1076 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 SOCS5O75159 536 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 NADKO95544 446 aaPredicted RBP4.27□□□□□ -1.73
VPS50-214ENST00000477935 PIGRP01833 764 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 CSF2P04141 144 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 CD99P14209 185 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 LIFP15018 202 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 CHMP24386 653 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 MAN1A1P33908 653 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 PIK3CAP42336 1068 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 HOXA1P49639 335 aaPredicted RBP4.27□□□□□ -1.73
VPS50-214ENST00000477935 TERF1P54274 439 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 ST8SIA6P61647 398 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 RBP5P82980 135 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 NUCB1Q02818 461 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 ZFP36L1Q07352 338 aaKnown RBP4.27□□□□□ -1.73
VPS50-214ENST00000477935 HNRNPA1L2Q32P51 320 aaKnown RBP4.27□□□□□ -1.73
VPS50-214ENST00000477935 NEK5Q6P3R8 708 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 GSG1LQ6UXU4 331 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 OR52I2Q8NH67 350 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 DDI1Q8WTU0 396 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 PDCD6IPQ8WUM4 868 aaKnown RBP4.27□□□□□ -1.73
VPS50-214ENST00000477935 WBP2Q969T9 261 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 KIAA1143Q96AT1 154 aaPredicted RBP4.27□□□□□ -1.73
VPS50-214ENST00000477935 EGLN2Q96KS0 407 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 LRMDAQ9H2I8 198 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 MUC13Q9H3R2 512 aa4.27□□□□□ -1.73
VPS50-214ENST00000477935 OLA1Q9NTK5 396 aaKnown RBP4.27□□□□□ -1.73
VPS50-214ENST00000477935 MARCH4Q9P2E8 410 aaPredicted RBP4.27□□□□□ -1.73
VPS50-214ENST00000477935 LARSQ9P2J5 1176 aaKnown RBP4.27□□□□□ -1.73
VPS50-214ENST00000477935 ZFC3H1O60293 1989 aaKnown RBP4.27□□□□□ -1.73
VPS50-214ENST00000477935 POLEQ07864 2286 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 OBSL1O75147 1896 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 OR5K3A6NET4 321 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 LIPT2A6NK58 231 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 D6RAR5 112 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 CPLX1O14810 134 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 AQP9O43315 295 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 DAB1O75553 588 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 NEBLO76041 1014 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 CDH2P19022 906 aaPredicted RBP4.26□□□□□ -1.73
VPS50-214ENST00000477935 POLR2EP19388 210 aaKnown RBP4.26□□□□□ -1.73
VPS50-214ENST00000477935 LMO2P25791 158 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 HLA-FP30511 346 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 UGT1A3P35503 534 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 AHRP35869 848 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 RPL24P83731 157 aaKnown RBP4.26□□□□□ -1.73
VPS50-214ENST00000477935 CDC20Q12834 499 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 DEFB109BQ30KR1 87 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 MPPE1Q53F39 396 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 OTUD3Q5T2D3 398 aaPredicted RBP4.26□□□□□ -1.73
VPS50-214ENST00000477935 PLEKHM3Q6ZWE6 761 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 CHST9Q7L1S5 443 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 ADIPOR2Q86V24 386 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 HPS6Q86YV9 775 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 MMAAQ8IVH4 418 aaKnown RBP4.26□□□□□ -1.73
VPS50-214ENST00000477935 DAW1Q8N136 415 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 PDILTQ8N807 584 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 ANKRD52Q8NB46 1076 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 CCDC112Q8NEF3 446 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 OR8K5Q8NH50 307 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 UTP15Q8TED0 518 aaKnown RBP4.26□□□□□ -1.73
VPS50-214ENST00000477935 TMEM255BQ8WV15 326 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 FAM131CQ96AQ9 280 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 PHF21AQ96BD5 680 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 CENPTQ96BT3 561 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 C1orf74Q96LT6 269 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 SMC6Q96SB8 1091 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 LSG1Q9H089 658 aaKnown RBP4.26□□□□□ -1.73
VPS50-214ENST00000477935 RWDD1Q9H446 243 aaPredicted RBP4.26□□□□□ -1.73
VPS50-214ENST00000477935 GPN2Q9H9Y4 310 aaPredicted RBP4.26□□□□□ -1.73
VPS50-214ENST00000477935 CHST11Q9NPF2 352 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 SPASTQ9UBP0 616 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 POLG2Q9UHN1 485 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 ITGA11Q9UKX5 1188 aa4.26□□□□□ -1.73
VPS50-214ENST00000477935 KLF2Q9Y5W3 355 aaPredicted RBP4.26□□□□□ -1.73
VPS50-214ENST00000477935 ATP8B3O60423 1300 aa4.25□□□□□ -1.73
VPS50-214ENST00000477935 SPTY2D1-AS1A0A0U1RR47 76 aa4.25□□□□□ -1.73
VPS50-214ENST00000477935 EDDM13A0A1B0GTR0 161 aa4.25□□□□□ -1.73
VPS50-214ENST00000477935 LMO7DNF2Z398 122 aa4.25□□□□□ -1.73
VPS50-214ENST00000477935 INPP4BO15327 924 aa4.25□□□□□ -1.73
VPS50-214ENST00000477935 SYNGR3O43761 229 aa4.25□□□□□ -1.73
VPS50-214ENST00000477935 LRCH4O75427 683 aa4.25□□□□□ -1.73
VPS50-214ENST00000477935 SORBS2O94875 1100 aaKnown RBP4.25□□□□□ -1.73
VPS50-214ENST00000477935 ITIH1P19827 911 aa4.25□□□□□ -1.73
VPS50-214ENST00000477935 TCN2P20062 427 aa4.25□□□□□ -1.73
VPS50-214ENST00000477935 WARSP23381 471 aaKnown RBP4.25□□□□□ -1.73
VPS50-214ENST00000477935 MAT2AP31153 395 aaKnown RBP4.25□□□□□ -1.73
VPS50-214ENST00000477935 AKT2P31751 481 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms