RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 LETM1O95202 739 aaPredicted RBP2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 SBK2P0C263 348 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 CLCN4P51793 760 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 UCP2P55851 309 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 BTG1P62324 171 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 UBXN1Q04323 297 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 CD300CQ08708 224 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 AP1B1Q10567 949 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 TEFQ10587 303 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 RPA4Q13156 261 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 EIF4EBP2Q13542 120 aaPredicted RBP2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 LASP1Q14847 261 aaKnown RBP2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 ACKR1Q16570 336 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 HFEQ30201 348 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 LRRC37A5PQ49AS3 106 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 FAM106AQ4KMX7 169 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 KCTD11Q693B1 232 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 SLC27A4Q6P1M0 643 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 PLBD1Q6P4A8 553 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 ZNF841Q6ZN19 808 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 C15orf52Q6ZUT6 534 aaKnown RBP2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 TRMT11Q7Z4G4 463 aaKnown RBP2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 PRSS42Q7Z5A4 293 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 LAX1Q8IWV1 398 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 CNTN4Q8IWV2 1026 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 TEX26Q8N6G2 289 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 TMEM99Q8N816 258 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 CLEC1AQ8NC01 280 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 MGARPQ8TDB4 240 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 CHPT1Q8WUD6 406 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 SEPT8Q92599 483 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 CASP10Q92851 521 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 FAM46BQ96A09 425 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 C5orf30Q96GV9 206 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 IL12RB2Q99665 862 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 HOXD1Q9GZZ0 328 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 SLITRK2Q9H156 845 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 TUBB1Q9H4B7 451 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 MTHFD2LQ9H903 347 aaPredicted RBP2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 AKIRIN1Q9H9L7 192 aaPredicted RBP2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 GTSE1Q9NYZ3 720 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 LNPEPQ9UIQ6 1025 aa2.44□□□□□ -2.02
CCDC88A-212ENST00000474059 CCDC162PA2VCL2 907 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 GTPBP10A4D1E9 387 aaKnown RBP2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 CACNB4O00305 520 aaPredicted RBP2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 SLC1A7O00341 560 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 ECE2O60344 883 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 GRAP2O75791 330 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 BAG2O95816 211 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 CTNNA2P26232 953 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 GJB2P29033 226 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 PDHA2P29803 388 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 SMSP52788 366 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 SLC3A1Q07837 685 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 NPRL3Q12980 569 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 GRB14Q14449 540 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 IFI44LQ53G44 452 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 FAM182AQ5T1J6 154 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 ATP1A1-AS1Q5TC04 95 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 TCEAL6Q6IPX3 200 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 MACC1Q6ZN28 852 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 C17orf107Q6ZR85 190 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 ZFAND4Q86XD8 727 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 TMEM126BQ8IUX1 230 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 THEM5Q8N1Q8 247 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 OR4D10Q8NGI6 311 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 RNASE8Q8TDE3 154 aaKnown RBP2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 GGHQ92820 318 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 SLC35C1Q96A29 364 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 BPIFA2Q96DR5 249 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 LURAP1Q96LR2 239 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 ATF6BQ99941 703 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 CHCHD5Q9BSY4 110 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 ACAT2Q9BWD1 397 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 MTIF3Q9H2K0 278 aaKnown RBP2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 MAGEF1Q9HAY2 307 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 DNAJC11Q9NVH1 559 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 MIS18AQ9NYP9 233 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 CTSZQ9UBR2 303 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 MAD2L2Q9UI95 211 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 PSORS1C1Q9UIG5 152 aa2.43□□□□□ -2.02
CCDC88A-212ENST00000474059 hCG_38984A0A1B0GV85 526 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 IQCMA0A1B0GVH7 501 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 C2orf92A0A1B0GVN3 265 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 NPIPB9F8W1W9 429 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 DDX39AO00148 427 aaKnown RBP2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 SURF4O15260 269 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 TLX2O43763 284 aaPredicted RBP2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 VEGFDO43915 354 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 LRCH4O75427 683 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 CLN5O75503 358 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 CEACAM4O75871 244 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 OLFM2O95897 454 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 PNPP00491 289 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 ODC1P11926 461 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 CPA3P15088 417 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 HLA-DPA1P20036 260 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 FEN1P39748 380 aaKnown RBP2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 SLC1A3P43003 542 aa2.42□□□□□ -2.02
CCDC88A-212ENST00000474059 IRX4P78413 519 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms