RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 SRRM1Q8IYB3 904 aaKnown RBP17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 LAS2Q8IYD9 372 aa17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 CENPLQ8N0S6 344 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 TMEM156Q8N614 296 aa17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 AGAP11Q8TF27 550 aa17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 PTPMT1Q8WUK0 201 aaPredicted RBP17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 MAPKAP1Q9BPZ7 522 aa17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 LIN28AQ9H9Z2 209 aaKnown RBP17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.48■□□□□ 0.39
CCDC88B-206ENST00000473405 SYNDIG1LA6NDD5 238 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 SUPT3HB4E1H0 165 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 RTCAO00442 366 aaKnown RBP17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 ADAM10O14672 748 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 PEX1O43933 1283 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 SUPT3HO75486 399 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 OR2J2O76002 312 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 ZFAND5O76080 213 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 SCELO95171 688 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 LTA4HP09960 611 aaKnown RBP17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 MTHFD2P13995 350 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 ATP5A1P25705 553 aaKnown RBP17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 CRABP2P29373 138 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 CASQ1P31415 396 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 SSR4P51571 173 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 GPR85P60893 370 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 ETF1P62495 437 aaKnown RBP17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 TGM3Q08188 693 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 HIST2H2ACQ16777 129 aaPredicted RBP17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 CMPK2Q5EBM0 449 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 HIST2H2AA3Q6FI13 130 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 SYT10Q6XYQ8 523 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 C3P1Q6ZMU1 363 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 TBC1D1Q86TI0 1168 aaPredicted RBP17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 DOLPP1Q86YN1 238 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 TMEM132CQ8N3T6 1108 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 ZNF321PQ8N8H1 164 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 ACOT4Q8N9L9 421 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 ZFP62Q8NB50 900 aaPredicted RBP17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 CCDC77Q9BR77 488 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 TBCDQ9BTW9 1192 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 NMRAL1Q9HBL8 299 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 CHST11Q9NPF2 352 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 DEPPQ9NTK1 212 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 VTI1BQ9UEU0 232 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 YARS2Q9Y2Z4 477 aaKnown RBP17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 DNAJC13O75165 2243 aa17.47■□□□□ 0.39
CCDC88B-206ENST00000473405 MAP1AP78559 2803 aaPredicted RBP17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 ESYT3A0FGR9 886 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 HMX2A2RU54 273 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 ENO4A6NNW6 628 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 KLRC4-KLRK1H3BQV0 150 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 K7EPI3 171 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 TFECO14948 347 aaPredicted RBP17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 LDB3O75112 727 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 OR6B1O95007 311 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 IFNA16P05015 189 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 HIST1H1TP22492 207 aaPredicted RBP17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 SMSP52788 366 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 IRF9Q00978 393 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 RCN2Q14257 317 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 TMEM35AQ53FP2 167 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 RNF175Q8N4F7 328 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 OR7G3Q8NG95 312 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 OR14A16Q8NHC5 309 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 C16orf52Q8NHV5 167 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 KCTD4Q8WVF5 259 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 NXNL1Q96CM4 212 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 DMRTA2Q96SC8 542 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 ALOXE3Q9BYJ1 711 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 ROGDIQ9GZN7 287 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 MYOTQ9UBF9 498 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 OPTCQ9UBM4 332 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 CLCA3PQ9Y6N3 262 aa17.46■□□□□ 0.39
CCDC88B-206ENST00000473405 HIVEP1P15822 2718 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 C19orf84I3L1E1 186 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 HS6ST1O60243 411 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 SH3BGRLO75368 114 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 TUBB4AP04350 444 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 PCNAP12004 261 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 SERPINB1P30740 379 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 ID2Q02363 134 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 STX4Q12846 297 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 BMPR2Q13873 1038 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 UBAP2Q5T6F2 1119 aaKnown RBP17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 KHDRBS2Q5VWX1 349 aaKnown RBP17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 GRHL2Q6ISB3 625 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 MED27Q6P2C8 311 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 HSDL2Q6YN16 418 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 MORN4Q8NDC4 146 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 PSD4Q8NDX1 1056 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 SRFBP1Q8NEF9 429 aaKnown RBP17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 PHF10Q8WUB8 498 aaKnown RBP17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 SREK1Q8WXA9 508 aaKnown RBP17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 DAZLQ92904 295 aaKnown RBP17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 UBE2E3Q969T4 207 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 ANKRD9Q96BM1 317 aaPredicted RBP17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 RASL10BQ96S79 203 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 SORBS1Q9BX66 1292 aaKnown RBP17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 OR8D2Q9GZM6 311 aa17.45■□□□□ 0.38
CCDC88B-206ENST00000473405 TIMMDC1Q9NPL8 285 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms