RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 NAA30Q147X3 362 aaPredicted RBP14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 SETDB1Q15047 1291 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 PFKFB4Q16877 469 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 GRHL2Q6ISB3 625 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 KLC3Q6P597 504 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 CCDC91Q7Z6B0 441 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 ZNF227Q86WZ6 799 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 LAS2Q8IYD9 372 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 CPSF7Q8N684 471 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 ACOT4Q8N9L9 421 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 NOA1Q8NC60 698 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 SRFBP1Q8NEF9 429 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 OR7G3Q8NG95 312 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 RHEBL1Q8TAI7 183 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 CCDC120Q96HB5 630 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 MAGED4Q96JG8 741 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 GPR137Q96N19 417 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 CCDC77Q9BR77 488 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 TBCDQ9BTW9 1192 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 VPS11Q9H270 941 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 OR51B5Q9H339 312 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 CDC42EP4Q9H3Q1 356 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 ACSS3Q9H6R3 686 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 LYRM4Q9HD34 91 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 CPSF2Q9P2I0 782 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 DMGDHQ9UI17 866 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 CSMD2Q7Z408 3487 aa14.65□□□□□ -0.06
CCDC88B-205ENST00000472524 CDK2AP1O14519 115 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 PRKNO60260 465 aaPredicted RBP14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 SLC19A2O60779 497 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 CTNSO60931 367 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 LDB3O75112 727 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 ITGA10O75578 1167 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 KLHL2O95198 593 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 ALDOAP04075 364 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 HIST1H1TP22492 207 aaPredicted RBP14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 TRHRP34981 398 aaPredicted RBP14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 CA7P43166 264 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 RAP1GDS1P52306 607 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 ID2Q02363 134 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 STX4Q12846 297 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 ART3Q13508 389 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 ACAP2Q15057 778 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 ELAVL1Q15717 326 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 AP5B1Q2VPB7 878 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 TMEM35AQ53FP2 167 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 C16orf47Q6ZP98 133 aaPredicted RBP14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 CEP128Q6ZU80 1094 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 CHSY3Q70JA7 882 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 CYP4Z2PQ8N1L4 340 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 TMEM132CQ8N3T6 1108 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 MMGT1Q8N4V1 131 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 TMEM156Q8N614 296 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 HUS1BQ8NHY5 278 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 IFT81Q8WYA0 676 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 CMTM7Q96FZ5 175 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 PHF12Q96QT6 1004 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 SORBS1Q9BX66 1292 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 ALOXE3Q9BYJ1 711 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 LIN28AQ9H9Z2 209 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 KCMF1Q9P0J7 381 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 CLCA3PQ9Y6N3 262 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 SPACA6W5XKT8 324 aa14.64□□□□□ -0.07
CCDC88B-205ENST00000472524 PKDREJQ9NTG1 2253 aa14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 SYNDIG1LA6NDD5 238 aa14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 ZNHIT1O43257 154 aa14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 ZFAND5O76080 213 aa14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 INHBAP08476 426 aa14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 ZNF24P17028 368 aa14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 TNNI3P19429 210 aa14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 CPN2P22792 545 aa14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 SERPINB1P30740 379 aa14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 MEOX1P50221 254 aa14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 GPR143P51810 404 aa14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 ALDH18A1P54886 795 aaKnown RBP14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 CASP6P55212 293 aa14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 C3AR1Q16581 482 aa14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 KHDRBS2Q5VWX1 349 aaKnown RBP14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 MRGPRGQ86SM5 289 aa14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 PLD6Q8N2A8 252 aaKnown RBP14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 ARMC10Q8N2F6 343 aa14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 DAZLQ92904 295 aaKnown RBP14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 FMO2Q99518 471 aa14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 MTERF1Q99551 399 aaKnown RBP14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 TRIM45Q9H8W5 580 aaPredicted RBP14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 ACTR8Q9H981 624 aa14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 DMRT3Q9NQL9 472 aa14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 TINAGQ9UJW2 476 aa14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 PPIEQ9UNP9 301 aaKnown RBP14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 KLF13Q9Y2Y9 288 aaPredicted RBP14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 KLF2Q9Y5W3 355 aaPredicted RBP14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 TEP1Q99973 2627 aaKnown RBP14.63□□□□□ -0.07
CCDC88B-205ENST00000472524 SIX3O95343 332 aaPredicted RBP14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 SNRPB2P08579 225 aaKnown RBP14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 HTR1EP28566 365 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 ARL1P40616 181 aaPredicted RBP14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 RFC3P40938 356 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 SSR4P51571 173 aa14.62□□□□□ -0.07
CCDC88B-205ENST00000472524 RPS13P62277 151 aaKnown RBP14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms