RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 C20orf27Q9GZN8 174 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 ILKAPQ9H0C8 392 aaPredicted RBP11.24□□□□□ -0.61
VPS13D-204ENST00000469054 ING2Q9H160 280 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 TUBB1Q9H4B7 451 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 MANSC1Q9H8J5 431 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 PRDM9Q9NQV7 894 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 PRTFDC1Q9NRG1 225 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 LYARQ9NX58 379 aaKnown RBP11.24□□□□□ -0.61
VPS13D-204ENST00000469054 C19orf25Q9UFG5 118 aaPredicted RBP11.24□□□□□ -0.61
VPS13D-204ENST00000469054 PHF11Q9UIL8 331 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.24□□□□□ -0.61
VPS13D-204ENST00000469054 ATG4BQ9Y4P1 393 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 MMACHCQ9Y4U1 282 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 ASB4Q9Y574 426 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 KCNMB2Q9Y691 235 aa11.24□□□□□ -0.61
VPS13D-204ENST00000469054 IGKV3D-11A0A0A0MRZ8 115 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 BLACEA4D250 179 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 NPIPB8E9PQR5 432 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 PROM1O43490 865 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 CTNSO60931 367 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 COX6A1P12074 109 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 TLX1P31314 330 aaPredicted RBP11.23□□□□□ -0.61
VPS13D-204ENST00000469054 BUD31P41223 144 aaPredicted RBP11.23□□□□□ -0.61
VPS13D-204ENST00000469054 HNRNPFP52597 415 aaKnown RBP11.23□□□□□ -0.61
VPS13D-204ENST00000469054 HNRNPH2P55795 449 aaKnown RBP11.23□□□□□ -0.61
VPS13D-204ENST00000469054 HSD17B7P56937 341 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 PPP2R2AP63151 447 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 TNFRSF17Q02223 184 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 BTKQ06187 659 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 ACSM2AQ08AH3 577 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 SPIN4Q56A73 249 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 SPDYAQ5MJ70 313 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 DCAF10Q5QP82 559 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 ATG16L1Q676U5 607 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 ACSM2BQ68CK6 577 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 C18orf63Q68DL7 685 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 Q6ZSR9 355 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 LANCL3Q6ZV70 420 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 NDUFAF7Q7L592 441 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 CPEB2Q7Z5Q1 589 aaKnown RBP11.23□□□□□ -0.61
VPS13D-204ENST00000469054 ANKRD37Q7Z713 158 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 APLFQ8IW19 511 aaPredicted RBP11.23□□□□□ -0.61
VPS13D-204ENST00000469054 SCUBE1Q8IWY4 988 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 ZNF781Q8N8C0 355 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 RAB3IL1Q8TBN0 382 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 TWIST2Q8WVJ9 160 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 TTC9Q92623 222 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 TSLPQ969D9 159 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 C11orf24Q96F05 449 aaPredicted RBP11.23□□□□□ -0.61
VPS13D-204ENST00000469054 SORT1Q99523 831 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 RPF2Q9H7B2 306 aaKnown RBP11.23□□□□□ -0.61
VPS13D-204ENST00000469054 THAP1Q9NVV9 213 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 SIRT5Q9NXA8 310 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 MCM8Q9UJA3 840 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 FBXL4Q9UKA2 621 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 LHX6Q9UPM6 363 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 RAP2CQ9Y3L5 183 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 CCL27Q9Y4X3 112 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 PTGDR2Q9Y5Y4 395 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 CACNA1BQ00975 2339 aa11.23□□□□□ -0.61
VPS13D-204ENST00000469054 ANKRD11Q6UB99 2663 aaPredicted RBP11.22□□□□□ -0.61
VPS13D-204ENST00000469054 IGHV1-45A0A0A0MS14 117 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 A0A1W2PR48 441 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 ERVH48-1M5A8F1 160 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 RGS14O43566 566 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 GUCY1B2O75343 617 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 HPP00738 406 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 LINC00032P0C843 101 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 MAOAP21397 527 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 PRPH2P23942 346 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 RPL14P50914 215 aaKnown RBP11.22□□□□□ -0.61
VPS13D-204ENST00000469054 MAPK12P53778 367 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 TRA2BP62995 288 aaKnown RBP11.22□□□□□ -0.61
VPS13D-204ENST00000469054 RAE1P78406 368 aaKnown RBP11.22□□□□□ -0.61
VPS13D-204ENST00000469054 EEF1A2Q05639 463 aaKnown RBP11.22□□□□□ -0.61
VPS13D-204ENST00000469054 CHAF1BQ13112 559 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 SLC13A2Q13183 592 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 PCOLCEQ15113 449 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 LINC00303Q3SY05 128 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 CPZQ66K79 652 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 GALNT18Q6P9A2 607 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 DDIASQ8IXT1 998 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 KIRREL3Q8IZU9 778 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 CLEC1AQ8NC01 280 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 TANKQ92844 425 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 TM4SF18Q96CE8 201 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 METTL2AQ96IZ6 378 aaKnown RBP11.22□□□□□ -0.61
VPS13D-204ENST00000469054 CCT7Q99832 543 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 TRIM55Q9BYV6 548 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 ZNF700Q9H0M5 742 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 WDR41Q9HAD4 459 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 LRTM1Q9HBL6 345 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 ATP13A2Q9NQ11 1180 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 NECTIN3Q9NQS3 549 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 TEX10Q9NXF1 929 aaPredicted RBP11.22□□□□□ -0.61
VPS13D-204ENST00000469054 SCN3AQ9NY46 2000 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 HAO1Q9UJM8 370 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 CLDN16Q9Y5I7 305 aa11.22□□□□□ -0.61
VPS13D-204ENST00000469054 USP24Q9UPU5 2620 aa11.21□□□□□ -0.61
VPS13D-204ENST00000469054 NSG1A0A0A6YYJ2 146 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms