RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 HTR2BP41595 481 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 SELENOWP63302 87 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 SRSF11Q05519 484 aaKnown RBP11.88□□□□□ -0.51
HDAC4-208ENST00000463007 ZNF438Q7Z4V0 828 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 NPAS3Q8IXF0 933 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 TESCQ96BS2 214 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 HHIPQ96QV1 700 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 GABARAPL1Q9H0R8 117 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 CLN6Q9NWW5 311 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 TVP23BQ9NYZ1 205 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 TEKT2Q9UIF3 430 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 ERVW-1Q9UQF0 538 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 PCDHGA2Q9Y5H1 932 aa11.88□□□□□ -0.51
HDAC4-208ENST00000463007 FABP12A6NFH5 140 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 CHRNB1P11230 501 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 CHMP24386 653 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 CCR2P41597 374 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 NSG1P42857 185 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 LSM11P83369 360 aaKnown RBP eCLIP11.87□□□□□ -0.51
HDAC4-208ENST00000463007 IFI44LQ53G44 452 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 SMUG1Q53HV7 270 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 B3GLCTQ6Y288 498 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 RBM45Q8IUH3 476 aaKnown RBP11.87□□□□□ -0.51
HDAC4-208ENST00000463007 CSGALNACT1Q8TDX6 532 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 CHAC2Q8WUX2 184 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 TP53INP1Q96A56 240 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 YME1L1Q96TA2 773 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 CPEB1Q9BZB8 566 aaKnown RBP11.87□□□□□ -0.51
HDAC4-208ENST00000463007 A0A1W2PQL4 384 aaPredicted RBP11.87□□□□□ -0.51
HDAC4-208ENST00000463007 TRBC2A0A5B9 178 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 SYNDIG1LA6NDD5 238 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 CTSAP10619 480 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 NAT1P18440 290 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 PSMA1P25786 263 aaKnown RBP11.87□□□□□ -0.51
HDAC4-208ENST00000463007 UGT2B10P36537 528 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 ARHGEF6Q15052 776 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 SLC5A12Q1EHB4 618 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 ERICH5Q6P6B1 374 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 ZNF366Q8N895 744 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 ENKURQ8TC29 256 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 MTERF3Q96E29 417 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 TM9SF2Q99805 663 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 SLC46A2Q9BY10 475 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 SLC29A3Q9BZD2 475 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 CCDC177Q9NQR7 707 aaPredicted RBP11.87□□□□□ -0.51
HDAC4-208ENST00000463007 AP3M1Q9Y2T2 418 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 KCNE1BA0A087WTH5 132 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 TRBV4-1A0A0J9YWV2 114 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 LEFTY2O00292 366 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 TNFRSF21O75509 655 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 IGSF6O95976 241 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 OR56A5P0C7T3 313 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 MICAQ29983 383 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 SPDYE7PQ495Y7 208 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 CDKL4Q5MAI5 379 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 OR2G6Q5TZ20 316 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 TPRG1Q6ZUI0 275 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 C11orf96Q7Z7L8 435 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 THOC6Q86W42 341 aaKnown RBP11.87□□□□□ -0.51
HDAC4-208ENST00000463007 SYNPOQ8N3V7 929 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 ASB15Q8WXK1 588 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 PITX2Q99697 317 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 NRTNQ99748 197 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 C11orf54Q9H0W9 315 aaPredicted RBP11.87□□□□□ -0.51
HDAC4-208ENST00000463007 GPATCH2Q9NW75 528 aa11.87□□□□□ -0.51
HDAC4-208ENST00000463007 HECAQ9UBI9 543 aaPredicted RBP11.87□□□□□ -0.51
HDAC4-208ENST00000463007 MUC22E2RYF6 1773 aaPredicted RBP11.86□□□□□ -0.51
HDAC4-208ENST00000463007 A0A0G2JN53 185 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 FAM172BPA6NC97 362 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 ANKDD1BA6NHY2 528 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 NPIPB8E9PQR5 432 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 EIF3FO00303 357 aaPredicted RBP11.86□□□□□ -0.51
HDAC4-208ENST00000463007 TLX2O43763 284 aaPredicted RBP11.86□□□□□ -0.51
HDAC4-208ENST00000463007 PSIP1O75475 530 aaKnown RBP11.86□□□□□ -0.51
HDAC4-208ENST00000463007 STATHP02808 62 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 CBSLP0DN79 551 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 CBSP35520 551 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 GPLD1P80108 840 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 C2orf80Q0P641 193 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 CAMK2BQ13554 666 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 CDK10Q15131 360 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 C22orf39Q6P5X5 142 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 RFPL4BQ6ZWI9 263 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 USP30Q70CQ3 517 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 CCDC190Q86UF4 302 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 GHDCQ8N2G8 530 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 OR52E4Q8NGH9 312 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 HUS1BQ8NHY5 278 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 DHRS1Q96LJ7 313 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 SIGLEC11Q96RL6 698 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 MTG2Q9H4K7 406 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 NMNAT1Q9HAN9 279 aaPredicted RBP11.86□□□□□ -0.51
HDAC4-208ENST00000463007 LSM7Q9UK45 103 aaKnown RBP11.86□□□□□ -0.51
HDAC4-208ENST00000463007 CCL26Q9Y258 94 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 POFUT2Q9Y2G5 429 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 GPR52Q9Y2T5 361 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 CHD7Q9P2D1 2997 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 GSAPA4D1B5 854 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 CARNS1A5YM72 827 aa11.86□□□□□ -0.51
HDAC4-208ENST00000463007 ZSCAN5BA6NJL1 495 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms