RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	ACAN	P16112	2415 aa		10.33	□□□□□ -0.76
PTPN7-204	ENST00000462815	AKAP6	Q13023	2319 aa		10.33	□□□□□ -0.76
PTPN7-204	ENST00000462815	NSD1	Q96L73	2696 aa	Predicted RBP	10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	EML6	Q6ZMW3	1958 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	MYOCOS	A0A1B0GUC4	107 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	BCKDK	O14874	412 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	CTNS	O60931	367 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	WDR47	O94967	919 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	ETHE1	O95571	254 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	CCL3	P10147	92 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	GNAZ	P19086	355 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	CNR1	P21554	472 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	GSTM2	P28161	218 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	GGT5	P36269	586 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	ELK3	P41970	407 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	HNMT	P50135	292 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	TAS2R39	P59534	338 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	SLC13A2	Q13183	592 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	TSN	Q15631	228 aa	Known RBP	10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	NDUFAF5	Q5TEU4	345 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	HSDL2	Q6YN16	418 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	SLC22A16	Q86VW1	577 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	TMEM200A	Q86VY9	491 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	TGIF2LY	Q8IUE0	185 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	FAM109A	Q8N4B1	249 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	GOLM1	Q8NBJ4	401 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	MORN4	Q8NDC4	146 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	TTL	Q8NG68	377 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	OR5M3	Q8NGP4	307 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	ZNF721	Q8TF20	911 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	ASB15	Q8WXK1	588 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	SERINC2	Q96SA4	455 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	FAM173A	Q9BQD7	235 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	CCDC77	Q9BR77	488 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	TUBA8	Q9NY65	449 aa	Predicted RBP	10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	SPRR3	Q9UBC9	169 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	ERVK-11	Q9UQG0	969 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	ATG4B	Q9Y4P1	393 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	NCKAP5	O14513	1909 aa		10.32	□□□□□ -0.76
PTPN7-204	ENST00000462815	DNAJC13	O75165	2243 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	LRRC3C	A6NJW4	275 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	FIGNL2	A6NMB9	653 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	ACOT7	O00154	380 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	B3GALT2	O43825	422 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	SUSD5	O60279	629 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	SCEL	O95171	688 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	IGKV3-11	P04433	115 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	SAT1	P21673	171 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	ZFP36L2	P47974	494 aa	Known RBP	10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	DNASE1L1	P49184	302 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	PLA2G16	P53816	162 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	RNF4	P78317	190 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	IGLV3-21	P80748	117 aa	Predicted RBP	10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	PLGLB1	Q02325	96 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	ZNF791	Q3KP31	576 aa	Predicted RBP	10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	CES4A	Q5XG92	561 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	POMZP3	Q6PJE2	187 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	PAOX	Q6QHF9	649 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	B3GNT6	Q6ZMB0	384 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	DGAT2L6	Q6ZPD8	337 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	RTL4	Q6ZR62	310 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	GK5	Q6ZS86	529 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	C9orf40	Q8IXQ3	194 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	TMEM132C	Q8N3T6	1108 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	NKAP	Q8N5F7	415 aa	Known RBP	10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	OR14A16	Q8NHC5	309 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	GABPB2	Q8TAK5	448 aa	Predicted RBP	10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	SLC2A12	Q8TD20	617 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	GRK7	Q8WTQ7	553 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	SREK1	Q8WXA9	508 aa	Known RBP	10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	ANKRD9	Q96BM1	317 aa	Predicted RBP	10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	FAR2	Q96K12	515 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	CAPZA3	Q96KX2	299 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	OSBPL9	Q96SU4	736 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	CNPPD1	Q9BV87	410 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	PITHD1	Q9GZP4	211 aa	Predicted RBP	10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	REXO4	Q9GZR2	422 aa	Known RBP	10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	DDX47	Q9H0S4	455 aa	Known RBP	10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	EHD1	Q9H4M9	534 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	ZNF703	Q9H7S9	590 aa	Predicted RBP	10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	CCM2L	Q9NUG4	571 aa	Predicted RBP	10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	MOCS1	Q9NZB8	636 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	GPRC5B	Q9NZH0	403 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	ST6GALNAC2	Q9UJ37	374 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	CHMP2B	Q9UQN3	213 aa		10.31	□□□□□ -0.76
PTPN7-204	ENST00000462815	ABCA4	P78363	2273 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	FAM95C	A0A1B0GW59	222 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	SYNDIG1L	A6NDD5	238 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	PABPN1L	A6NDY0	278 aa	Known RBP	10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	KDM4E	B2RXH2	506 aa	Predicted RBP	10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	CLDN4	O14493	209 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	WDR1	O75083	606 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	LDB3	O75112	727 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	RFPL3S	P0C7P2	107 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	CD99	P14209	185 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	MTTP	P55157	894 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	CBLB	Q13191	982 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	MYBPH	Q13203	477 aa		10.3	□□□□□ -0.76
PTPN7-204	ENST00000462815	BMPR2	Q13873	1038 aa		10.3	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms