RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 OTOGQ6ZRI0 2925 aa14.29□□□□□ -0.12
SKA3-204ENST00000462482 OR14I1A6ND48 311 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 C17orf105B2RV13 164 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 TGFBR3LH3BV60 316 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 PRKNO60260 465 aaPredicted RBP14.28□□□□□ -0.12
SKA3-204ENST00000462482 CCNT2O60583 730 aaKnown RBP14.28□□□□□ -0.12
SKA3-204ENST00000462482 STMN1P16949 149 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 GGT5P36269 586 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 HSPA7P48741 367 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 KRTAP10-9P60411 292 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 CALCOCO2Q13137 446 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 DOC2AQ14183 400 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 AP5B1Q2VPB7 878 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 GXYLT1Q4G148 440 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 TMEM35AQ53FP2 167 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 CES4AQ5XG92 561 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 C16orf47Q6ZP98 133 aaPredicted RBP14.28□□□□□ -0.12
SKA3-204ENST00000462482 CHSY3Q70JA7 882 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 SPATA6LQ8N4H0 392 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 MARVELD2Q8N4S9 558 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 GOLM1Q8NBJ4 401 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 ACBD4Q8NC06 268 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 MYRIPQ8NFW9 859 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 SREK1Q8WXA9 508 aaKnown RBP14.28□□□□□ -0.12
SKA3-204ENST00000462482 F2RL3Q96RI0 385 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 SMC6Q96SB8 1091 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 CSF3RQ99062 836 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 TREX2Q9BQ50 279 aaPredicted RBP14.28□□□□□ -0.12
SKA3-204ENST00000462482 ZNF559Q9BR84 538 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 CENPKQ9BS16 269 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 TTTY12Q9BZ98 90 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 PHACTR1Q9C0D0 580 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 LDAHQ9H6V9 325 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 EXO5Q9H790 373 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 DEPPQ9NTK1 212 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 RNF112Q9ULX5 631 aa14.28□□□□□ -0.12
SKA3-204ENST00000462482 MTO1Q9Y2Z2 717 aaKnown RBP14.28□□□□□ -0.12
SKA3-204ENST00000462482 MYOCOSA0A1B0GUC4 107 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 NKX2-6A6NCS4 301 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 FAM47E-STBD1D6RA91 191 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 G3V3Y1 287 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 TAPBPO15533 448 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 ACVR2AP27037 513 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 SERPINB1P30740 379 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 MSH2P43246 934 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 HK2P52789 917 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 RNF4P78317 190 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 MYBPHQ13203 477 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 CHIT1Q13231 466 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 FASTKD3Q14CZ7 662 aaKnown RBP14.27□□□□□ -0.13
SKA3-204ENST00000462482 ZNF750Q32MQ0 723 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 ZNF585AQ6P3V2 769 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 TMEM200AQ86VY9 491 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 CCDC71Q8IV32 467 aaPredicted RBP14.27□□□□□ -0.13
SKA3-204ENST00000462482 FAM109AQ8N4B1 249 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 OR5M9Q8NGP3 310 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 SLC2A12Q8TD20 617 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 PTPMT1Q8WUK0 201 aaPredicted RBP14.27□□□□□ -0.13
SKA3-204ENST00000462482 EXT2Q93063 718 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 CPNE1Q99829 537 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 TMEM79Q9BSE2 394 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 UCK2Q9BZX2 261 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 ZDHHC11Q9H8X9 412 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 CAB39LQ9H9S4 337 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 IL1RL2Q9HB29 575 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.27□□□□□ -0.13
SKA3-204ENST00000462482 ACAD8Q9UKU7 415 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 ZNF490Q9ULM2 529 aaPredicted RBP14.27□□□□□ -0.13
SKA3-204ENST00000462482 SNX24Q9Y343 169 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 CLDN16Q9Y5I7 305 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 SAR1BQ9Y6B6 198 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 SCN2AQ99250 2005 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 SCN3AQ9NY46 2000 aa14.27□□□□□ -0.13
SKA3-204ENST00000462482 TMEM200CA6NKL6 621 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 E7ESA3 106 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 PHGDHO43175 533 aaKnown RBP14.26□□□□□ -0.13
SKA3-204ENST00000462482 PCNAP12004 261 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 CPN2P22792 545 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 MSX1P28360 303 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 TLX1P31314 330 aaPredicted RBP14.26□□□□□ -0.13
SKA3-204ENST00000462482 SSR2P43308 183 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 MAN2A2P49641 1150 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 NUP107P57740 925 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 GNG11P61952 73 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 TBL3Q12788 808 aaKnown RBP14.26□□□□□ -0.13
SKA3-204ENST00000462482 BIKQ13323 160 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 SLC10A1Q14973 349 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 TBCCQ15814 346 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 FBXO48Q5FWF7 155 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 WLSQ5T9L3 541 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 MED27Q6P2C8 311 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 B3GNT6Q6ZMB0 384 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 LRRC70Q7Z2Q7 622 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 VN1R5Q7Z5H4 357 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 ACOT4Q8N9L9 421 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 SLC22A8Q8TCC7 542 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 ESAMQ96AP7 390 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 SARAFQ96BY9 339 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 WDR34Q96EX3 536 aa14.26□□□□□ -0.13
SKA3-204ENST00000462482 RBM18Q96H35 190 aaKnown RBP14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms