RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 CLNKQ7Z7G1 428 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 GPSM1Q86YR5 675 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 PTPMT1Q8WUK0 201 aaPredicted RBP12.33□□□□□ -0.44
HMGB3-204ENST00000448905 UBE2E3Q969T4 207 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 PTCD3Q96EY7 689 aaKnown RBP12.33□□□□□ -0.44
HMGB3-204ENST00000448905 LRRC46Q96FV0 321 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 TSPAN17Q96FV3 270 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 RBM18Q96H35 190 aaKnown RBP12.33□□□□□ -0.44
HMGB3-204ENST00000448905 QRFPRQ96P65 431 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 TTYH2Q9BSA4 534 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 TBCDQ9BTW9 1192 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 EFCAB11Q9BUY7 163 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 TTTY12Q9BZ98 90 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 DDX47Q9H0S4 455 aaKnown RBP12.33□□□□□ -0.44
HMGB3-204ENST00000448905 LYRM4Q9HD34 91 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 NPDC1Q9NQX5 325 aaPredicted RBP12.33□□□□□ -0.44
HMGB3-204ENST00000448905 PNPLA3Q9NST1 481 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 DEPPQ9NTK1 212 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 RYDENQ9NUL5 291 aaKnown RBP12.33□□□□□ -0.44
HMGB3-204ENST00000448905 DNAJC11Q9NVH1 559 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 ALKBH4Q9NXW9 302 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 WWOXQ9NZC7 414 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 SLC17A6Q9P2U8 582 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 ZNF223Q9UK11 482 aaPredicted RBP12.33□□□□□ -0.44
HMGB3-204ENST00000448905 IKZF3Q9UKT9 509 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 TEX264Q9Y6I9 313 aa12.33□□□□□ -0.44
HMGB3-204ENST00000448905 A0A1B0GVC2 190 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 TMEM200CA6NKL6 621 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 C17orf105B2RV13 164 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 C4orf51C9J302 202 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 KLK8O60259 260 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 PRKNO60260 465 aaPredicted RBP12.32□□□□□ -0.44
HMGB3-204ENST00000448905 WDR1O75083 606 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 IGHG3P01860 377 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 S100BP04271 92 aaPredicted RBP12.32□□□□□ -0.44
HMGB3-204ENST00000448905 GABRA1P14867 456 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 TCP1P17987 556 aaKnown RBP12.32□□□□□ -0.44
HMGB3-204ENST00000448905 GGT5P36269 586 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 SLC6A12P48065 614 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 HK2P52789 917 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 ATP6V0D1P61421 351 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 DR1Q01658 176 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 POU4F1Q01851 419 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 TFF3Q07654 80 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 TGFBIQ15582 683 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 MPEG1Q2M385 716 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 AP5B1Q2VPB7 878 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 ADPRMQ3LIE5 342 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 TMEM35AQ53FP2 167 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 SLC22A10Q63ZE4 541 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 STEAP4Q687X5 459 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 SULT1C3Q6IMI6 304 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 ANKMY2Q8IV38 441 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 SLC35F6Q8N357 371 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 SNX31Q8N9S9 440 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 CHDHQ8NE62 594 aaPredicted RBP12.32□□□□□ -0.44
HMGB3-204ENST00000448905 F2RL3Q96RI0 385 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 KRT12Q99456 494 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 DERL2Q9GZP9 239 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 PRDM7Q9NQW5 492 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.32□□□□□ -0.44
HMGB3-204ENST00000448905 MOCS1Q9NZB8 636 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 POLQO75417 2590 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 PKDREJQ9NTG1 2253 aa12.32□□□□□ -0.44
HMGB3-204ENST00000448905 ATP6AP2A0A1C7CYW4 349 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 G3V3Y1 287 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 AQP7O14520 342 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 HCN1O60741 890 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 ATP6AP2O75787 350 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 GLSO94925 669 aaPredicted RBP12.31□□□□□ -0.44
HMGB3-204ENST00000448905 NADKO95544 446 aaPredicted RBP12.31□□□□□ -0.44
HMGB3-204ENST00000448905 IVDP26440 423 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 TLX1P31314 330 aaPredicted RBP12.31□□□□□ -0.44
HMGB3-204ENST00000448905 HNRNPFP52597 415 aaKnown RBP12.31□□□□□ -0.44
HMGB3-204ENST00000448905 IRF8Q02556 426 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 PDIA2Q13087 525 aaKnown RBP12.31□□□□□ -0.44
HMGB3-204ENST00000448905 DOC2AQ14183 400 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 PDK4Q16654 411 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 HYAL4Q2M3T9 481 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 SLC25A35Q3KQZ1 300 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 PIGGQ5H8A4 983 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 TRILQ7L0X0 811 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 SLC15A4Q8N697 577 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 TMEM251Q8N6I4 163 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 TMEM52Q8NDY8 209 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 FBXO36Q8NEA4 188 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 ANKRD49Q8WVL7 239 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 CDKL2Q92772 493 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 SCYL1Q96KG9 808 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 CENPKQ9BS16 269 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 PHACTR1Q9C0D0 580 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 AICDAQ9GZX7 198 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 RHOJQ9H4E5 214 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 PLAC1Q9HBJ0 212 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 MS4A12Q9NXJ0 267 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 CD274Q9NZQ7 290 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 ZNF490Q9ULM2 529 aaPredicted RBP12.31□□□□□ -0.44
HMGB3-204ENST00000448905 PSAT1Q9Y617 370 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 F8P00451 2351 aa12.31□□□□□ -0.44
HMGB3-204ENST00000448905 PCNX1Q96RV3 2341 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms