RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 DUSP23Q9BVJ7 150 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 HDHD2Q9H0R4 259 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 OR51I1Q9H343 314 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 SDHAF3Q9NRP4 125 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 C5AR2Q9P296 337 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 ACSL6Q9UKU0 697 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 SSR3Q9UNL2 185 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 GREB1LQ9C091 1923 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 PRR23D1E9PI22 279 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 C9P02748 559 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 PRR23D2P0DMB1 279 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 DBTP11182 482 aaKnown RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 OR1E2P47887 323 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 RPS26P62854 115 aaKnown RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 RBBP4Q09028 425 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 HENMT1Q5T8I9 393 aaKnown RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 FAM180BQ6P0A1 224 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 ZNF551Q7Z340 670 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 LMNTD1Q8N9Z9 388 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 BIRC8Q96P09 236 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 PAIP1Q9H074 479 aaKnown RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 RACGAP1Q9H0H5 632 aa7.08□□□□□ -1.28
SYNE1-213ENST00000448038 SDR39U1Q9NRG7 319 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-213ENST00000448038 ANKRD12Q6UB98 2062 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 SLC9B1P1A6NJY1 282 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 CPSF4LA6NMK7 179 aaKnown RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 HCN1O60741 890 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 ZNF888P0CJ79 500 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 ARNTP27540 789 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 CERS1P27544 350 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 HTR1EP28566 365 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 ACSL1P33121 698 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 ADPRHP54922 357 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 ACY1Q03154 408 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 MERTKQ12866 999 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 NR0B2Q15466 257 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 TCTN1Q2MV58 587 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 CYP27C1Q4G0S4 372 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 CLEC12AQ5QGZ9 265 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 RNF111Q6ZNA4 994 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 IKBIPQ70UQ0 350 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 ERMP1Q7Z2K6 904 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 CLEC14AQ86T13 490 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 KBTBD8Q8NFY9 601 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 BBS10Q8TAM1 723 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 ADAMTS18Q8TE60 1221 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 MACROD1Q9BQ69 325 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 LRIT1Q9P2V4 623 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 PLCL2Q9UPR0 1127 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 AQP9O43315 295 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 TLX3O43711 291 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 TMCC2O75069 709 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 PVRP15151 417 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 FPR1P21462 350 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 TAS2R38P59533 333 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 B3GNT6Q6ZMB0 384 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 RBM44Q6ZP01 1051 aaKnown RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 OR2L5Q8NG80 312 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 SERINC2Q96SA4 455 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 ACPTQ9BZG2 426 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 CHRM5P08912 532 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 RPS6KA3P51812 740 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 ARSFP54793 590 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 INHBCP55103 352 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 PLGLB1Q02325 96 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 KRR1Q13601 381 aaKnown RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 CDKN3Q16667 212 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 HACD2Q6Y1H2 254 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 VRK3Q8IV63 474 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 CCDC103Q8IW40 242 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 THAP3Q8WTV1 239 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 SH3YL1Q96HL8 342 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 ALPK1Q96QP1 1244 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 DPH2Q9BQC3 489 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 WDR83Q9BRX9 315 aaKnown RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 EPHX3Q9H6B9 360 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 NEK6Q9HC98 313 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 POT1Q9NUX5 634 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 LIPT1Q9Y234 373 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 CAB39Q9Y376 341 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 TTC3P53804 2025 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 K7ESM1 405 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 E2F3O00716 465 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 DCNP07585 359 aaKnown RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 MYL9P24844 172 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 GSTM2P28161 218 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 KCNC4Q03721 635 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 PRDX1Q06830 199 aaKnown RBP7.07□□□□□ -1.28
SYNE1-213ENST00000448038 ANGPT1Q15389 498 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 NSDHLQ15738 373 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 COQ5Q5HYK3 327 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 TRIQKQ629K1 86 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 GALNT10Q86SR1 603 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 SNX33Q8WV41 574 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 C1GALT1C1Q96EU7 318 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 MCHR1Q99705 422 aa7.07□□□□□ -1.28
SYNE1-213ENST00000448038 SORBS1Q9BX66 1292 aaKnown RBP7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms