RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 CDH13P55290 713 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 GGTA1PQ4G0N0 100 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 RPUSD3Q6P087 351 aaKnown RBP14.21□□□□□ -0.13
LIMS3-201ENST00000437679 CYP20A1Q6UW02 462 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 RPS27LQ71UM5 84 aaKnown RBP14.21□□□□□ -0.13
LIMS3-201ENST00000437679 TDRPQ86YL5 185 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 SLC22A9Q8IVM8 553 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 LGI4Q8N135 537 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 BEST3Q8N1M1 668 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 ZCCHC7Q8N3Z6 543 aaKnown RBP14.21□□□□□ -0.13
LIMS3-201ENST00000437679 KIF2BQ8N4N8 673 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 C7orf57Q8NEG2 295 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 NFAM1Q8NET5 270 aaPredicted RBP14.21□□□□□ -0.13
LIMS3-201ENST00000437679 B3GNT7Q8NFL0 401 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 OR4F6Q8NGB9 312 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 SERPINI1Q99574 410 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 UTP23Q9BRU9 249 aaKnown RBP14.21□□□□□ -0.13
LIMS3-201ENST00000437679 ALOXE3Q9BYJ1 711 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 DEFB126Q9BYW3 111 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 ELOVL6Q9H5J4 265 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 CDCP1Q9H5V8 836 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 ADAP2Q9NPF8 381 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 PHF11Q9UIL8 331 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 PPT2Q9UMR5 302 aa14.21□□□□□ -0.13
LIMS3-201ENST00000437679 A0A1W2PPM1 405 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 TGFBR3LH3BV60 316 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 DLX3O60479 287 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 GLRA3O75311 464 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 SUPT7LO94864 414 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 SEMA3DO95025 777 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 TSPAN8P19075 237 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 TLX1P31314 330 aaPredicted RBP14.2□□□□□ -0.14
LIMS3-201ENST00000437679 HSD17B3P37058 310 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 UQCRFS1P47985 274 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 CLCN2P51788 898 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 VSNL1P62760 191 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 CLCQ05315 142 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 SERTAD2Q14140 314 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 RASA2Q15283 850 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 NR6A1Q15406 480 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 ELAVL1Q15717 326 aaKnown RBP14.2□□□□□ -0.14
LIMS3-201ENST00000437679 INAQ16352 499 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 ZNF678Q5SXM1 525 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 FAM180AQ6UWF9 173 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 GPR180Q86V85 440 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 RPS19BP1Q86WX3 136 aaKnown RBP14.2□□□□□ -0.14
LIMS3-201ENST00000437679 TMEM132CQ8N3T6 1108 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 MYRIPQ8NFW9 859 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 GRHL3Q8TE85 626 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 TRPC4APQ8TEL6 797 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 VMP1Q96GC9 406 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 NPAS2Q99743 824 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 LYARQ9NX58 379 aaKnown RBP14.2□□□□□ -0.14
LIMS3-201ENST00000437679 NTNG1Q9Y2I2 539 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 CLDN16Q9Y5I7 305 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 CLCA3PQ9Y6N3 262 aa14.2□□□□□ -0.14
LIMS3-201ENST00000437679 FLNBO75369 2602 aaKnown RBP14.2□□□□□ -0.14
LIMS3-201ENST00000437679 RELNP78509 3460 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 TRBV11-1A0A0K0K1C0 115 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 GABRR3A8MPY1 467 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 CDK2AP1O14519 115 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 PRAMEF2O60811 474 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 LDB3O75112 727 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 CDH16O75309 829 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 ETHE1O95571 254 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 TNNI3P19429 210 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 IMPDH1P20839 514 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 PPP2R1BP30154 601 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 BSGP35613 385 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 BUD31P41223 144 aaPredicted RBP14.19□□□□□ -0.14
LIMS3-201ENST00000437679 CCT5P48643 541 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 PRKAA2P54646 552 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 TNFRSF17Q02223 184 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 OC90Q02509 493 aaPredicted RBP14.19□□□□□ -0.14
LIMS3-201ENST00000437679 TUBA3CQ13748 450 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 ELOAQ14241 798 aaKnown RBP14.19□□□□□ -0.14
LIMS3-201ENST00000437679 UNC50Q53HI1 259 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 SGO1Q5FBB7 561 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 LETMD1Q6P1Q0 360 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 TUBA3EQ6PEY2 450 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 NUDT13Q86X67 352 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 HORMAD2Q8N7B1 307 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 BCORP1Q8N888 145 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 EPS8L3Q8TE67 593 aaKnown RBP14.19□□□□□ -0.14
LIMS3-201ENST00000437679 DAZLQ92904 295 aaKnown RBP14.19□□□□□ -0.14
LIMS3-201ENST00000437679 NCLNQ969V3 563 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 CCDC126Q96EE4 140 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 TMEM237Q96Q45 408 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 BARD1Q99728 777 aaKnown RBP14.19□□□□□ -0.14
LIMS3-201ENST00000437679 ZNF717Q9BY31 904 aaPredicted RBP14.19□□□□□ -0.14
LIMS3-201ENST00000437679 RPF2Q9H7B2 306 aaKnown RBP14.19□□□□□ -0.14
LIMS3-201ENST00000437679 DDX31Q9H8H2 851 aaKnown RBP14.19□□□□□ -0.14
LIMS3-201ENST00000437679 AHSPQ9NZD4 102 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 VTI1BQ9UEU0 232 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 TRPS1Q9UHF7 1281 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 SNX6Q9UNH7 406 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 STK38LQ9Y2H1 464 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 LRRK2Q5S007 2527 aa14.19□□□□□ -0.14
LIMS3-201ENST00000437679 A0A0A6YYD5 115 aa14.18□□□□□ -0.14
LIMS3-201ENST00000437679 MYOCOSA0A1B0GUC4 107 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms