RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 RP1L1Q8IWN7 2480 aaPredicted RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 CEP192Q8TEP8 1941 aa2.41□□□□□ -2.02
VPS13A-208ENST00000423463 SPTBN5Q9NRC6 3674 aaKnown RBP2.41□□□□□ -2.02
VPS13A-208ENST00000423463 GLYATL1P3A0A0U1RQE8 302 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 NPIPB13A6NJU9 1138 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 NPIPB5A8MRT5 1133 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 AGAP14A8MT82 685 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 NPIPB4C9JG80 1138 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 H7C0S8 307 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 CCDC188H7C350 402 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 CHUKO15111 745 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 INPP4BO15327 924 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 LDB2O43679 373 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 TLX3O43711 291 aaPredicted RBP2.4□□□□□ -2.02
VPS13A-208ENST00000423463 VEGFDO43915 354 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 USP12O75317 370 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 SLC25A14O95258 325 aaPredicted RBP2.4□□□□□ -2.02
VPS13A-208ENST00000423463 SOD1P00441 154 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 KRT14P02533 472 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 FGF2P09038 288 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 CSF1P09603 554 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 ACP5P13686 325 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 ETS1P14921 441 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 TPSB2P20231 275 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 ACP1P24666 158 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 MAGEA6P43360 314 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 CLCNKAP51800 687 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 LINC00205P59089 165 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 MPP1Q00013 466 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 RHAGQ02094 409 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 PMPCAQ10713 525 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 ILF3Q12906 894 aaKnown RBP eCLIP2.4□□□□□ -2.02
VPS13A-208ENST00000423463 TPSAB1Q15661 275 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 CHRNA6Q15825 494 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 PRTGQ2VWP7 1150 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 GPR33Q49SQ1 333 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 GXYLT1Q4G148 440 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 PYCR3Q53H96 274 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 PIK3CD-AS1Q5SR53 167 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 LDLRAP1Q5SW96 308 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 MTFR2Q6P444 385 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 CCDC137Q6PK04 289 aaKnown RBP2.4□□□□□ -2.02
VPS13A-208ENST00000423463 PPP1R21Q6ZMI0 780 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 KDM7AQ6ZMT4 941 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 TAF8Q7Z7C8 310 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 MMP21Q8N119 569 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 ENDOVQ8N8Q3 282 aaKnown RBP2.4□□□□□ -2.02
VPS13A-208ENST00000423463 DNAAF3Q8N9W5 541 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 FAM47BQ8NA70 645 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 MCUQ8NE86 351 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 OR6C4Q8NGE1 309 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 OR52K1Q8NGK4 314 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 HEXDCQ8WVB3 486 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 ADAMTS14Q8WXS8 1223 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 PEX13Q92968 403 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 NAT6Q93015 286 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 GLYATL1Q969I3 302 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 ULK4Q96C45 1275 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 CDKN2AIPNLQ96HQ2 116 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 MS4A14Q96JA4 679 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 APOLD1Q96LR9 279 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 OR2M4Q96R27 311 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 LRRC61Q9BV99 259 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 AP1M1Q9BXS5 423 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 TCEAL2Q9H3H9 227 aaPredicted RBP2.4□□□□□ -2.02
VPS13A-208ENST00000423463 BPIFA1Q9NP55 256 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 SEMA4BQ9NPR2 832 aaPredicted RBP2.4□□□□□ -2.02
VPS13A-208ENST00000423463 POT1Q9NUX5 634 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 NLE1Q9NVX2 485 aaPredicted RBP2.4□□□□□ -2.02
VPS13A-208ENST00000423463 SMOXQ9NWM0 555 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 BFARQ9NZS9 450 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 PCYOX1Q9UHG3 505 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 SUFUQ9UMX1 484 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 GPR34Q9UPC5 381 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 CACNA1EQ15878 2313 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 TRIOO75962 3097 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 KNL1Q8NG31 2342 aa2.4□□□□□ -2.02
VPS13A-208ENST00000423463 MAGEB16A2A368 324 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 HEATR9A2RTY3 570 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 EME2A4GXA9 379 aaPredicted RBP2.4□□□□□ -2.03
VPS13A-208ENST00000423463 OR5K4A6NMS3 321 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 B4DGG1 531 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 KMOO15229 486 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 ZW10O43264 779 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 GRID2O43424 1007 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 BUD23O43709 281 aaKnown RBP2.4□□□□□ -2.03
VPS13A-208ENST00000423463 UGT1A9O60656 530 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 SRP72O76094 671 aaKnown RBP2.4□□□□□ -2.03
VPS13A-208ENST00000423463 CDK14O94921 469 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 SLC4A1P02730 911 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 GP1BAP07359 652 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 APRTP07741 180 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 ZSCAN5DPP0CG00 497 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 MLNP12872 115 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 SLC2A4P14672 509 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 UGT1A6P19224 532 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 UGT1A1P22309 533 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 UGT1A4P22310 534 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 CASQ1P31415 396 aa2.4□□□□□ -2.03
VPS13A-208ENST00000423463 UGT1A3P35503 534 aa2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms