RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 MORN4Q8NDC4 146 aa13.75□□□□□ -0.21
RPS28-201ENST00000417088 ASB15Q8WXK1 588 aa13.75□□□□□ -0.21
RPS28-201ENST00000417088 DAZLQ92904 295 aaKnown RBP13.75□□□□□ -0.21
RPS28-201ENST00000417088 WDR34Q96EX3 536 aa13.75□□□□□ -0.21
RPS28-201ENST00000417088 ZDHHC11Q9H8X9 412 aa13.75□□□□□ -0.21
RPS28-201ENST00000417088 CAB39LQ9H9S4 337 aa13.75□□□□□ -0.21
RPS28-201ENST00000417088 PRDM7Q9NQW5 492 aa13.75□□□□□ -0.21
RPS28-201ENST00000417088 NSMCE4AQ9NXX6 385 aa13.75□□□□□ -0.21
RPS28-201ENST00000417088 WWOXQ9NZC7 414 aa13.75□□□□□ -0.21
RPS28-201ENST00000417088 VTI1BQ9UEU0 232 aa13.75□□□□□ -0.21
RPS28-201ENST00000417088 MED13LQ71F56 2210 aa13.74□□□□□ -0.21
RPS28-201ENST00000417088 FAM90A27PA6NNH2 459 aa13.74□□□□□ -0.21
RPS28-201ENST00000417088 NPIPA2E9PIF3 369 aa13.74□□□□□ -0.21
RPS28-201ENST00000417088 NPIPA3F8WFD2 350 aa13.74□□□□□ -0.21
RPS28-201ENST00000417088 STK16O75716 305 aa13.74□□□□□ -0.21
RPS28-201ENST00000417088 GLSO94925 669 aaPredicted RBP13.74□□□□□ -0.21
RPS28-201ENST00000417088 PMPCAQ10713 525 aa13.74□□□□□ -0.21
RPS28-201ENST00000417088 STX4Q12846 297 aa13.74□□□□□ -0.21
RPS28-201ENST00000417088 RCN2Q14257 317 aa13.74□□□□□ -0.21
RPS28-201ENST00000417088 EFTUD2Q15029 972 aaKnown RBP eCLIP13.74□□□□□ -0.211e-12■■■■□ 23.8
RPS28-201ENST00000417088 ZNF750Q32MQ0 723 aa13.74□□□□□ -0.21
RPS28-201ENST00000417088 GXYLT1Q4G148 440 aa13.74□□□□□ -0.21
RPS28-201ENST00000417088 CDKL4Q5MAI5 379 aa13.74□□□□□ -0.21
RPS28-201ENST00000417088 SULT1C3Q6IMI6 304 aa13.74□□□□□ -0.21
RPS28-201ENST00000417088 PAOXQ6QHF9 649 aa13.74□□□□□ -0.21
RPS28-201ENST00000417088 RGS9BPQ6ZS82 235 aa13.74□□□□□ -0.21
RPS28-201ENST00000417088 CAPN12Q6ZSI9 719 aa13.74□□□□□ -0.21
RPS28-201ENST00000417088 CCDC71Q8IV32 467 aaPredicted RBP13.74□□□□□ -0.21
RPS28-201ENST00000417088 SNX31Q8N9S9 440 aa13.74□□□□□ -0.21
RPS28-201ENST00000417088 KIAA1191Q96A73 305 aa13.74□□□□□ -0.21
RPS28-201ENST00000417088 PTCD3Q96EY7 689 aaKnown RBP13.74□□□□□ -0.21
RPS28-201ENST00000417088 CNOT10Q9H9A5 744 aaKnown RBP13.74□□□□□ -0.21
RPS28-201ENST00000417088 COPS7BQ9H9Q2 264 aaPredicted RBP13.74□□□□□ -0.21
RPS28-201ENST00000417088 LYRM4Q9HD34 91 aa13.74□□□□□ -0.21
RPS28-201ENST00000417088 HCFC1P51610 2035 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 EFCAB8A8MWE9 144 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 CXorf49A8MYA2 514 aaPredicted RBP13.73□□□□□ -0.21
RPS28-201ENST00000417088 G3V3Y1 287 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 ACOT7O00154 380 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 PHGDHO43175 533 aaKnown RBP13.73□□□□□ -0.21
RPS28-201ENST00000417088 ZNF354AO60765 605 aaPredicted RBP13.73□□□□□ -0.21
RPS28-201ENST00000417088 LDB3O75112 727 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 CCDC166P0CW27 439 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 CD1DP15813 335 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 EPORP19235 508 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 TNNI3P19429 210 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 CNR1P21554 472 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 RPL21P46778 160 aaKnown RBP13.73□□□□□ -0.21
RPS28-201ENST00000417088 NUP107P57740 925 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 RNF4P78317 190 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 ILF2Q12905 390 aaKnown RBP13.73□□□□□ -0.21
RPS28-201ENST00000417088 OR4D1Q15615 310 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 PDK4Q16654 411 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 SPNS3Q6ZMD2 512 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 ZNF793Q6ZN11 406 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 RTL4Q6ZR62 310 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 ACAD11Q709F0 780 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 SLC22A16Q86VW1 577 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 ZBED8Q8IZ13 594 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 OR5M9Q8NGP3 310 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 OR8K3Q8NH51 312 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 OR14A16Q8NHC5 309 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 SLC2A12Q8TD20 617 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 SCYL1Q96KG9 808 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 MAPKAP1Q9BPZ7 522 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 FAM173AQ9BQD7 235 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 EFCAB11Q9BUY7 163 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 TTTY12Q9BZ98 90 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 OR8D2Q9GZM6 311 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 KCNJ16Q9NPI9 418 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 PNPLA3Q9NST1 481 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 PTBP2Q9UKA9 531 aaKnown RBP13.73□□□□□ -0.21
RPS28-201ENST00000417088 SNX24Q9Y343 169 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 LIPGQ9Y5X9 500 aa13.73□□□□□ -0.21
RPS28-201ENST00000417088 FOXO6A8MYZ6 492 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 C17orf105B2RV13 164 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 IGHG3P01860 377 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 ATP5A1P25705 553 aaKnown RBP13.72□□□□□ -0.21
RPS28-201ENST00000417088 MSX1P28360 303 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 SSTR1P30872 391 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 KCNC1P48547 511 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 ATP6V0D1P61421 351 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 ID2Q02363 134 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 IRF8Q02556 426 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 TGM3Q08188 693 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 FOXO1Q12778 655 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 LAPTM5Q13571 262 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 SERTAD2Q14140 314 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 PAGE2BQ5JRK9 111 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 NDUFAF5Q5TEU4 345 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 GK5Q6ZS86 529 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 DMRTC2Q8IXT2 367 aaPredicted RBP13.72□□□□□ -0.21
RPS28-201ENST00000417088 TMEM251Q8N6I4 163 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 ACOT4Q8N9L9 421 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 OR5M3Q8NGP4 307 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 ANKRD9Q96BM1 317 aaPredicted RBP13.72□□□□□ -0.21
RPS28-201ENST00000417088 TSPAN17Q96FV3 270 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 KCNC2Q96PR1 638 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 SMC6Q96SB8 1091 aa13.72□□□□□ -0.21
RPS28-201ENST00000417088 TBCDQ9BTW9 1192 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms