RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 TCRBV9S1A1TA0A576 114 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 C17orf105B2RV13 164 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 NPIPA2E9PIF3 369 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 NPIPA3F8WFD2 350 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 CTNSO60931 367 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 PRKRAO75569 313 aaKnown RBP10.74□□□□□ -0.69
USP4-204ENST00000416417 ETHE1O95571 254 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 TGFB1P01137 390 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 TUBB4AP04350 444 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 CELA3AP09093 270 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 GGT5P36269 586 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 PAFAH1B1P43034 410 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 IRF8Q02556 426 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 TLE4Q04727 773 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 C2orf54Q08AI8 447 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 STX4Q12846 297 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 EFTUD2Q15029 972 aaKnown RBP eCLIP10.74□□□□□ -0.69
USP4-204ENST00000416417 ELAVL1Q15717 326 aaKnown RBP10.74□□□□□ -0.69
USP4-204ENST00000416417 SULT1C3Q6IMI6 304 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 HSDL2Q6YN16 418 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 DGAT2L6Q6ZPD8 337 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 CTAGE3PQ8IX95 158 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 PPWD1Q96BP3 646 aaKnown RBP10.74□□□□□ -0.69
USP4-204ENST00000416417 GPR22Q99680 433 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 RBBP8Q99708 897 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 PNPLA3Q9NST1 481 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 NSMCE4AQ9NXX6 385 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 GPRC5BQ9NZH0 403 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 COQ3Q9NZJ6 369 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 MYOTQ9UBF9 498 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 PTBP2Q9UKA9 531 aaKnown RBP10.74□□□□□ -0.69
USP4-204ENST00000416417 RNF6Q9Y252 685 aa10.74□□□□□ -0.69
USP4-204ENST00000416417 MRPS33Q9Y291 106 aaKnown RBP10.74□□□□□ -0.69
USP4-204ENST00000416417 CELSR1Q9NYQ6 3014 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 A0A088AWK7 358 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 WASHC1A8K0Z3 465 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 CCDC188H7C350 402 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 UBXN8O00124 270 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 HRKO00198 91 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 RAD51CO43502 376 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 C1QAP02745 245 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 STMN1P16949 149 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 ZNF10P21506 573 aaPredicted RBP10.73□□□□□ -0.69
USP4-204ENST00000416417 ATP5A1P25705 553 aaKnown RBP10.73□□□□□ -0.69
USP4-204ENST00000416417 DNASE1L1P49184 302 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 PMPCAQ10713 525 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 DDX39BQ13838 428 aaKnown RBP10.73□□□□□ -0.69
USP4-204ENST00000416417 TERF2Q15554 542 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 TRADDQ15628 312 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 TCAIMQ8N3R3 496 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 TMEM132CQ8N3T6 1108 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 ACOT4Q8N9L9 421 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 SLC2A12Q8TD20 617 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 ZNF473Q8WTR7 871 aaKnown RBP10.73□□□□□ -0.69
USP4-204ENST00000416417 ANKRD9Q96BM1 317 aaPredicted RBP10.73□□□□□ -0.69
USP4-204ENST00000416417 TSPAN17Q96FV3 270 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 SCYL1Q96KG9 808 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 CAPS2Q9BXY5 557 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 MS4A8Q9BY19 250 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 TTTY12Q9BZ98 90 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 OR51B5Q9H339 312 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 CNOT10Q9H9A5 744 aaKnown RBP10.73□□□□□ -0.69
USP4-204ENST00000416417 SEMA4BQ9NPR2 832 aaPredicted RBP10.73□□□□□ -0.69
USP4-204ENST00000416417 NPDC1Q9NQX5 325 aaPredicted RBP10.73□□□□□ -0.69
USP4-204ENST00000416417 GRHL1Q9NZI5 618 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 TXNDC16Q9P2K2 825 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 PKDREJQ9NTG1 2253 aa10.73□□□□□ -0.69
USP4-204ENST00000416417 POLQO75417 2590 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 LRRC14BA6NHZ5 514 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 FAM159BA6NKW6 160 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 SUPT3HB4E1H0 165 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 CDK2AP1O14519 115 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 FGF17O60258 216 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 SUPT3HO75486 399 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 LRATO95237 230 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 S100BP04271 92 aaPredicted RBP10.72□□□□□ -0.69
USP4-204ENST00000416417 CCL3P10147 92 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 SSTR2P30874 369 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 PIGAP37287 484 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 MAGEA5P43359 124 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 NUP107P57740 925 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 RAB10P61026 200 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 RNF4P78317 190 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 SLMAPQ14BN4 828 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 C3orf62Q6ZUJ4 267 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 RAPH1Q70E73 1250 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 CCDC25Q86WR0 208 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 PPM1NQ8N819 430 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 PDPRQ8NCN5 879 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 MORN4Q8NDC4 146 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 CHTF18Q8WVB6 975 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 CDKL2Q92772 493 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 KIAA1191Q96A73 305 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 MRRFQ96E11 262 aaKnown RBP10.72□□□□□ -0.69
USP4-204ENST00000416417 WDR34Q96EX3 536 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 SEC16BQ96JE7 1060 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 UBXN10Q96LJ8 280 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 CPNE1Q99829 537 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 SPOCK3Q9BQ16 436 aa10.72□□□□□ -0.69
USP4-204ENST00000416417 EFCAB11Q9BUY7 163 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms