RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 ATAD3AQ9NVI7 634 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 DHCR7Q9UBM7 475 aaKnown RBP13.46□□□□□ -0.25
SF3B1-204ENST00000414963 CES1P1Q9UKY3 287 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 TMEM184BQ9Y519 407 aaPredicted RBP13.46□□□□□ -0.25
SF3B1-204ENST00000414963 CEP250Q9BV73 2442 aa13.46□□□□□ -0.25
SF3B1-204ENST00000414963 LOC100653049A0A140TA62 436 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 A0A1W2PNU3 283 aaPredicted RBP13.45□□□□□ -0.26
SF3B1-204ENST00000414963 BBIP1A8MTZ0 92 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 PLD2O14939 933 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 CFLARO15519 480 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 KRT34O76011 436 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 PGRP06401 933 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 NR2F6P10588 404 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 LAMP1P11279 417 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 PIM1P11309 404 aaPredicted RBP13.45□□□□□ -0.26
SF3B1-204ENST00000414963 COX7A2P14406 83 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 CAPN3P20807 821 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 CALB2P22676 271 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 CPN2P22792 545 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 S100A3P33764 101 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 RORAP35398 523 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 ETV5P41161 510 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 KIR3DL1P43629 444 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 PHC1P78364 1004 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 OLR1P78380 273 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 LRRC74AQ0VAA2 488 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 ZSCAN26Q16670 478 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 RSPO4Q2I0M5 234 aaPredicted RBP13.45□□□□□ -0.26
SF3B1-204ENST00000414963 VPS26BQ4G0F5 336 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 SPANXN4Q5MJ08 99 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 C18orf63Q68DL7 685 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 SLC48A1Q6P1K1 146 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 YTHDF3Q7Z739 585 aaKnown RBP13.45□□□□□ -0.26
SF3B1-204ENST00000414963 TICAM1Q8IUC6 712 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 MMP21Q8N119 569 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 GALNT15Q8N3T1 639 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 DTWD1Q8N5C7 304 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 FAM47BQ8NA70 645 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 SLC38A9Q8NBW4 561 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 OR7A2PQ8NGA2 310 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 CDC26Q8NHZ8 85 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 TANKQ92844 425 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 PPCDCQ96CD2 204 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 CTRCQ99895 268 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 DPH2Q9BQC3 489 aaPredicted RBP13.45□□□□□ -0.26
SF3B1-204ENST00000414963 WDR41Q9HAD4 459 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 ZNF304Q9HCX3 659 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 MIEF1Q9NQG6 463 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 PSME2Q9UL46 239 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 NDUFAF1Q9Y375 327 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 MAP4K5Q9Y4K4 846 aa13.45□□□□□ -0.26
SF3B1-204ENST00000414963 ASPDHA6ND91 283 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 CCDC154A6NI56 674 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 C9JVG2 144 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 NR5A2O00482 541 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 FBP2O00757 339 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 PGRMC2O15173 223 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 HNRNPCL1O60812 293 aaKnown RBP13.44□□□□□ -0.26
SF3B1-204ENST00000414963 SCN2BO60939 215 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 CPNE3O75131 537 aaKnown RBP13.44□□□□□ -0.26
SF3B1-204ENST00000414963 ATP5HO75947 161 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 CBX6O95503 412 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 JMJD7P0C870 316 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 ESRRAP11474 423 aaPredicted RBP13.44□□□□□ -0.26
SF3B1-204ENST00000414963 ITIH1P19827 911 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 FRKP42685 505 aaPredicted RBP13.44□□□□□ -0.26
SF3B1-204ENST00000414963 HNRNPFP52597 415 aaKnown RBP13.44□□□□□ -0.26
SF3B1-204ENST00000414963 DGKQP52824 942 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 WNT3P56703 355 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 ABHD18Q0P651 414 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 TARDBPQ13148 414 aaKnown RBP eCLIP13.44□□□□□ -0.26
SF3B1-204ENST00000414963 PRSS53Q2L4Q9 553 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 PGS1Q32NB8 556 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 NKAIN1Q4KMZ8 207 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 LACTB2Q53H82 288 aaPredicted RBP13.44□□□□□ -0.26
SF3B1-204ENST00000414963 ZNF385BQ569K4 471 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 ANXA8L1Q5VT79 327 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 OR52E8Q6IFG1 317 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 CCDC121Q6ZUS5 278 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 TMPRSS7Q7RTY8 843 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 ZNF595Q8IYB9 648 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 DSELQ8IZU8 1212 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 DPP10Q8N608 796 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 EFCAB3Q8N7B9 438 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 POU5F2Q8N7G0 328 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 OR51Q1Q8NH59 317 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 DNAJB14Q8TBM8 379 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 VPS33AQ96AX1 596 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 OR1F2PQ96R84 312 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 OR52E6Q96RD3 313 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 DUSP26Q9BV47 211 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 SPRY4Q9C004 299 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 SLC7A5P2Q9GIP4 190 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 RPF2Q9H7B2 306 aaKnown RBP13.44□□□□□ -0.26
SF3B1-204ENST00000414963 SLC22A11Q9NSA0 550 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 FAM120CQ9NX05 1096 aaKnown RBP13.44□□□□□ -0.26
SF3B1-204ENST00000414963 DLL3Q9NYJ7 618 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 SH3BP4Q9P0V3 963 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 HCN3Q9P1Z3 774 aa13.44□□□□□ -0.26
SF3B1-204ENST00000414963 NDOR1Q9UHB4 597 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms