RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ACTL9Q8TC94 416 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 CREB3L4Q8TEY5 395 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 LRRC61Q9BV99 259 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 ABCG8Q9H221 673 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 GBA3Q9H227 469 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 DPEP2Q9H4A9 486 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 SYNDIG1Q9H7V2 258 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 SCPEP1Q9HB40 452 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 C20orf141Q9NUB4 165 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 AKAP7Q9P0M2 348 aaPredicted RBP6.11□□□□□ -1.43
USP40-202ENST00000409945 CD84Q9UIB8 345 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 KLK13Q9UKR3 277 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 SUFUQ9UMX1 484 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 TDRD6O60522 2096 aaKnown RBP6.11□□□□□ -1.43
USP40-202ENST00000409945 CEP295Q9C0D2 2601 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 A0A0U1RQJ8 604 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 GAGE10A6NGK3 116 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 CYR61O00622 381 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 SLC25A14O95258 325 aaPredicted RBP6.11□□□□□ -1.43
USP40-202ENST00000409945 NUDT3O95989 172 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 PROS1P07225 676 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 IVLP07476 585 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 LHCGRP22888 699 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 STIP1P31948 543 aaKnown RBP6.11□□□□□ -1.43
USP40-202ENST00000409945 GNPDA1P46926 289 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 MARCKSL1P49006 195 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 DCDC1P59894 354 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 LAMB3Q13751 1172 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 ITGA9Q13797 1035 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 CDKN3Q16667 212 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 HES3Q5TGS1 186 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 TMEM81Q6P7N7 255 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 DOK6Q6PKX4 331 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 C16orf54Q6UWD8 224 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 CCNI2Q6ZMN8 369 aaPredicted RBP6.11□□□□□ -1.43
USP40-202ENST00000409945 GLT6D1Q7Z4J2 308 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 TECPR1Q7Z6L1 1165 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 LINC00523Q86TU6 105 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 TSPAN33Q86UF1 283 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 GPSM1Q86YR5 675 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 UEVLDQ8IX04 471 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 LSMEM2Q8N112 164 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 ZNF567Q8N184 647 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 KRT222Q8N1A0 295 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 BRSK1Q8TDC3 778 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 ADAMTS15Q8TE58 950 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 NTN5Q8WTR8 489 aaPredicted RBP6.11□□□□□ -1.43
USP40-202ENST00000409945 VOPP1Q96AW1 172 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 OR2M4Q96R27 311 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 RIOK2Q9BVS4 552 aaKnown RBP6.11□□□□□ -1.43
USP40-202ENST00000409945 STRADBQ9C0K7 418 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 SUDS3Q9H7L9 328 aaPredicted RBP6.11□□□□□ -1.43
USP40-202ENST00000409945 HOMER3Q9NSC5 361 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 VPS18Q9P253 973 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 ZNF711Q9Y462 761 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 JRKLQ9Y4A0 524 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 SAR1BQ9Y6B6 198 aa6.11□□□□□ -1.43
USP40-202ENST00000409945 TRBV5-7A0A0A0MS05 114 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 A0A0G2JK05 382 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 EME2A4GXA9 379 aaPredicted RBP6.1□□□□□ -1.43
USP40-202ENST00000409945 TMEM202A6NGA9 273 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 A6NNC1 897 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 B4DGG1 531 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 STX7O15400 261 aaKnown RBP6.1□□□□□ -1.43
USP40-202ENST00000409945 ERLIN1O75477 346 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 MT-CYBP00156 380 aaPredicted RBP6.1□□□□□ -1.43
USP40-202ENST00000409945 CLEC3BP05452 202 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 MMP2P08253 660 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 RALBP11234 206 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 ATP5F1P24539 256 aaPredicted RBP6.1□□□□□ -1.43
USP40-202ENST00000409945 MCM3P25205 808 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 HADHAP40939 763 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 RPS3AP61247 264 aaKnown RBP6.1□□□□□ -1.43
USP40-202ENST00000409945 WASHC5Q12768 1159 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 MED22Q15528 200 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 MIDNQ504T8 468 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 ANKRD20A2Q5SQ80 823 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 ANKRD20A1Q5TYW2 823 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 ANKRD20A3Q5VUR7 823 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 C4orf22Q6V702 233 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 SLC25A41Q8N5S1 370 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 TRAM1L1Q8N609 369 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 DNAAF1Q8NEP3 725 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 SPATA22Q8NHS9 363 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 ZCCHC10Q8TBK6 192 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 BLOC1S5Q8TDH9 187 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 OR1E3Q8WZA6 343 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 MSI2Q96DH6 328 aaKnown RBP6.1□□□□□ -1.43
USP40-202ENST00000409945 PDXPQ96GD0 296 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 HES6Q96HZ4 224 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 SPATA13Q96N96 652 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 WDFY2Q96P53 400 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 NAP1L3Q99457 506 aaPredicted RBP6.1□□□□□ -1.43
USP40-202ENST00000409945 CARD9Q9H257 536 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 LRRC40Q9H9A6 602 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 FGF22Q9HCT0 170 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 SPAG4Q9NPE6 437 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 KRT84Q9NSB2 600 aa6.1□□□□□ -1.43
USP40-202ENST00000409945 NFKBIL1Q9UBC1 381 aaPredicted RBP6.1□□□□□ -1.43
USP40-202ENST00000409945 APPL1Q9UKG1 709 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms