RNA–Protein interactions for RNA: ENST00000403408.2

SPTLC1P3-201, Transcript of serine palmitoyltransferase long chain base subunit 1 pseudogene 3, humanhuman

BASIC

Gene SPTLC1P3, Length 259 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1P3-201ENST00000403408 SHEQ5VZ18 495 aa10.95□□□□□ -0.66
SPTLC1P3-201ENST00000403408 HSDL2Q6YN16 418 aa10.95□□□□□ -0.66
SPTLC1P3-201ENST00000403408 FAM47BQ8NA70 645 aa10.95□□□□□ -0.66
SPTLC1P3-201ENST00000403408 GOLM1Q8NBJ4 401 aa10.95□□□□□ -0.66
SPTLC1P3-201ENST00000403408 ZNF669Q96BR6 464 aaPredicted RBP10.95□□□□□ -0.66
SPTLC1P3-201ENST00000403408 CCDC77Q9BR77 488 aa10.95□□□□□ -0.66
SPTLC1P3-201ENST00000403408 HAUS8Q9BT25 410 aa10.95□□□□□ -0.66
SPTLC1P3-201ENST00000403408 FRMD8P1Q9BZ68 369 aaPredicted RBP10.95□□□□□ -0.66
SPTLC1P3-201ENST00000403408 LDAHQ9H6V9 325 aa10.95□□□□□ -0.66
SPTLC1P3-201ENST00000403408 CLK4Q9HAZ1 481 aaKnown RBP10.95□□□□□ -0.66
SPTLC1P3-201ENST00000403408 PRTFDC1Q9NRG1 225 aa10.95□□□□□ -0.66
SPTLC1P3-201ENST00000403408 JKAMPQ9P055 326 aa10.95□□□□□ -0.66
SPTLC1P3-201ENST00000403408 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.95□□□□□ -0.66
SPTLC1P3-201ENST00000403408 TUBAL3A6NHL2 446 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 EIF3FO00303 357 aaPredicted RBP10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 SMAD7O15105 426 aaKnown RBP10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 PFDN6O15212 129 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 NRDCO43847 1150 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 ETHE1O95571 254 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 EPPINO95925 133 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 C8GP07360 202 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 SERPINA6P08185 405 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 GABRA1P14867 456 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 CCND1P24385 295 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 SOX18P35713 384 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 RNF4P78317 190 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 CCZ1BP86790 482 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 CCZ1P86791 482 aaPredicted RBP10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 ELAVL1Q15717 326 aaKnown RBP10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 ZNF791Q3KP31 576 aaPredicted RBP10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 PRAMEF20Q5VT98 475 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 DUPD1Q68J44 220 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 ADNP2Q6IQ32 1131 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 VN1R5Q7Z5H4 357 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 LRRC25Q8N386 305 aaPredicted RBP10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 LRRN4CLQ8ND94 238 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 ARMC2Q8NEN0 867 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 NEIL3Q8TAT5 605 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 SLC5A11Q8WWX8 675 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 LINGO1Q96FE5 620 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 Q96MF0 132 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 ADAP2Q9NPF8 381 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 SACM1LQ9NTJ5 587 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 FBXO5Q9UKT4 447 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 EDARQ9UNE0 448 aa10.94□□□□□ -0.66
SPTLC1P3-201ENST00000403408 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 HRKO00198 91 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 DVL2O14641 736 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 PRAMEF4O60810 478 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 PEX19P40855 299 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 MAGEA6P43360 314 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 HSD17B7P56937 341 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 RAB38P57729 211 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 ID2Q02363 134 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 KRTAP1-1Q07627 177 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 CRYZQ08257 329 aaKnown RBP10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 SLC13A2Q13183 592 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 BMPR2Q13873 1038 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 RBBP5Q15291 538 aaKnown RBP10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 TRIP13Q15645 432 aaPredicted RBP10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 CCNG2Q16589 344 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 PIGGQ5H8A4 983 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 DCST1Q5T197 706 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 PRAMEF9Q5VWM5 478 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 NIPAL1Q6NVV3 410 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 NXPE4Q6UWF7 544 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 DGAT2L6Q6ZPD8 337 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 TMEM139Q8IV31 216 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 SLC2A12Q8TD20 617 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 DOK4Q8TEW6 326 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 ZNF721Q8TF20 911 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 FBXL8Q96CD0 374 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 MS4A6EQ96DS6 147 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 SGCZQ96LD1 299 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 DESI2Q9BSY9 194 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 OR8D2Q9GZM6 311 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 EXO5Q9H790 373 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 ACKR4Q9NPB9 350 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 SAMD15Q9P1V8 674 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 SLC17A6Q9P2U8 582 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 ZNF629Q9UEG4 869 aaPredicted RBP10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 TRPS1Q9UHF7 1281 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 TRMT6Q9UJA5 497 aaKnown RBP10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 PCDHGB3Q9Y5G1 929 aa10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 RAI1Q7Z5J4 1906 aaPredicted RBP10.93□□□□□ -0.66
SPTLC1P3-201ENST00000403408 LRIT2A6NDA9 550 aa10.92□□□□□ -0.66
SPTLC1P3-201ENST00000403408 FAM47E-STBD1D6RA91 191 aa10.92□□□□□ -0.66
SPTLC1P3-201ENST00000403408 GUCA1CO95843 209 aa10.92□□□□□ -0.66
SPTLC1P3-201ENST00000403408 P04436 131 aa10.92□□□□□ -0.66
SPTLC1P3-201ENST00000403408 TIMP3P35625 211 aa10.92□□□□□ -0.66
SPTLC1P3-201ENST00000403408 LIM2P55344 173 aa10.92□□□□□ -0.66
SPTLC1P3-201ENST00000403408 SKP1P63208 163 aa10.92□□□□□ -0.66
SPTLC1P3-201ENST00000403408 ASPHQ12797 758 aa10.92□□□□□ -0.66
SPTLC1P3-201ENST00000403408 FOXF2Q12947 444 aa10.92□□□□□ -0.66
SPTLC1P3-201ENST00000403408 SP140Q13342 867 aa10.92□□□□□ -0.66
SPTLC1P3-201ENST00000403408 CSHL1Q14406 222 aa10.92□□□□□ -0.66
SPTLC1P3-201ENST00000403408 C18orf21Q32NC0 220 aaPredicted RBP10.92□□□□□ -0.66
SPTLC1P3-201ENST00000403408 FBXW10Q5XX13 1052 aa10.92□□□□□ -0.66
SPTLC1P3-201ENST00000403408 CASC4Q6P4E1 433 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms