RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 MARCH7Q9H992 704 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 COMMD3Q9UBI1 195 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 TCRBV5S2A0A599 114 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 FAM170BA6NMN3 283 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 FAM155AB1AL88 458 aaPredicted RBP17.74■□□□□ 0.43
USP48-204ENST00000400301 CCRL2O00421 344 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 GDI1P31150 447 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 SDC2P34741 201 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 SMSP52788 366 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 IL18Q14116 193 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 DDI2Q5TDH0 399 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 TMEM19Q96HH6 336 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 DMRT3Q9NQL9 472 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 SDK1Q7Z5N4 2213 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 RNASET2O00584 256 aaKnown RBP17.74■□□□□ 0.43
USP48-204ENST00000400301 ADRB3P13945 408 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 SLC15A1P46059 708 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 BTN3A2P78410 334 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 GINS1Q14691 196 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 DPPA4Q7L190 304 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 KLHDC8BQ8IXV7 354 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 SORBS1Q9BX66 1292 aaKnown RBP17.74■□□□□ 0.43
USP48-204ENST00000400301 SPRTNQ9H040 489 aaPredicted RBP17.74■□□□□ 0.43
USP48-204ENST00000400301 TMEM27Q9HBJ8 222 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 ANKHQ9HCJ1 492 aa17.74■□□□□ 0.43
USP48-204ENST00000400301 PAPPA2Q9BXP8 1791 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 IGLON5A6NGN9 336 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 ITGAMP11215 1152 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 EPCAMP16422 314 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 IHHQ14623 411 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 SPCS2Q15005 226 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 B3GNT8Q7Z7M8 397 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 C7orf61Q8IZ16 206 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 LILRA3Q8N6C8 439 aaPredicted RBP17.73■□□□□ 0.43
USP48-204ENST00000400301 ZNF513Q8N8E2 541 aaPredicted RBP17.73■□□□□ 0.43
USP48-204ENST00000400301 TMEM80Q96HE8 168 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 MIR1-1HGQ9H1L0 117 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 SLC25A37Q9NYZ2 338 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 MALT1Q9UDY8 824 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 ZNF221Q9UK13 617 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 DUXAA6NLW8 204 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 FZD6O60353 706 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 TCF3P15923 654 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 GSTM3P21266 225 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 GADD45AP24522 165 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 ILF3Q12906 894 aaKnown RBP eCLIP17.73■□□□□ 0.434e-7■□□□□ 9.7
USP48-204ENST00000400301 ENPP7Q6UWV6 458 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 IGFN1Q86VF2 1251 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 OR4E2Q8NGC2 313 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 HERVK_113Q902F9 699 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 MND1Q9BWT6 205 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 CLCA1A8K7I4 914 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 NUDT14O95848 222 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 B3GALT4O96024 378 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 HNRNPA1P09651 372 aaKnown RBP eCLIP17.73■□□□□ 0.43
USP48-204ENST00000400301 PRKAR1AP10644 381 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 ACSL5Q9ULC5 683 aa17.73■□□□□ 0.43
USP48-204ENST00000400301 JRKO75564 520 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 SRP54P61011 504 aaKnown RBP17.72■□□□□ 0.43
USP48-204ENST00000400301 HBA1P69905 142 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 CEP68Q76N32 757 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 RANBP3LQ86VV4 465 aaPredicted RBP17.72■□□□□ 0.43
USP48-204ENST00000400301 METTL2AQ96IZ6 378 aaKnown RBP17.72■□□□□ 0.43
USP48-204ENST00000400301 OR51V1Q9H2C8 321 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 ANKRA2Q9H9E1 313 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 FER1L6Q2WGJ9 1857 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 M0R129 80 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 APOL3O95236 402 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 SYN1P17600 705 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 CNR2P34972 360 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 GPR68Q15743 365 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 ZFP69Q49AA0 526 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 RNF44Q7L0R7 432 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 SAMD14Q8IZD0 417 aaPredicted RBP17.72■□□□□ 0.43
USP48-204ENST00000400301 COX18Q8N8Q8 333 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 ANHXE9PGG2 379 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 TNFRSF21O75509 655 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 KCNK5O95279 499 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 PRR35P0CG20 571 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 IMPA1P29218 277 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 PRLHRP49683 370 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 DAPP51397 102 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 Q6ZPB1 254 aaPredicted RBP17.72■□□□□ 0.43
USP48-204ENST00000400301 DTD2Q96FN9 168 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 TSSK6Q9BXA6 273 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 ASPNQ9BXN1 380 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 KCNK12Q9HB15 430 aa17.72■□□□□ 0.43
USP48-204ENST00000400301 CDRT1O95170 752 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 CD72P21854 359 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 GTF2E2P29084 291 aaKnown RBP17.71■□□□□ 0.43
USP48-204ENST00000400301 ZNF155Q12901 538 aaPredicted RBP17.71■□□□□ 0.43
USP48-204ENST00000400301 EIF4HQ15056 248 aaKnown RBP17.71■□□□□ 0.43
USP48-204ENST00000400301 NDUFA9Q16795 377 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 MICAQ29983 383 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 KHDRBS2Q5VWX1 349 aaKnown RBP17.71■□□□□ 0.43
USP48-204ENST00000400301 TUBA3EQ6PEY2 450 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 FAM98AQ8NCA5 519 aaKnown RBP17.71■□□□□ 0.43
USP48-204ENST00000400301 OR8J2Q8NGG1 315 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 KCTD7Q96MP8 289 aa17.71■□□□□ 0.43
USP48-204ENST00000400301 EPYCQ99645 322 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms