RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 PTPN3P26045 913 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 PSMB4P28070 264 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 MC3RP41968 323 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 HSPA7P48741 367 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 ITGA1P56199 1179 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 NHLH1Q02575 133 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 TEKQ02763 1124 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 OXA1LQ15070 435 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 SYT16Q17RD7 645 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 LY6KQ17RY6 165 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 EML3Q32P44 896 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 RAB6CQ53S08 254 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 PPM1JQ5JR12 505 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 CELF3Q5SZQ8 465 aaKnown RBP6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 ZNF470Q6ECI4 717 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 UGT2A3Q6UWM9 527 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 TMEM17Q86X19 198 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 TMEM192Q8IY95 271 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 CADM2Q8N3J6 435 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 ATXN7L3BQ96GX2 97 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 ZNF597Q96LX8 424 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 CNBD2Q96M20 576 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 KCTD15Q96SI1 283 aaPredicted RBP6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 GPR20Q99678 358 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 MROQ9BYG7 248 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 CCDC90BQ9GZT6 254 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 RAB6CQ9H0N0 254 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 PARD6AQ9NPB6 346 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 PRDM7Q9NQW5 492 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 TREX1Q9NSU2 369 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 TEX10Q9NXF1 929 aaPredicted RBP6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 MS4A12Q9NXJ0 267 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 ERAP1Q9NZ08 941 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 PDP1Q9P0J1 537 aaPredicted RBP6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 MYEF2Q9P2K5 600 aaKnown RBP6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 POM121BA6NF01 834 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 MANSC4A6NHS7 340 aaPredicted RBP6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 ZNF701M0R085 212 aaPredicted RBP6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 SLC43A1O75387 559 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 SCO1O75880 301 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 PDE9AO76083 593 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 CSF1P09603 554 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 CDH1P12830 882 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 NR4A2P43354 598 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 GLUD2P49448 558 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 SERPINH1P50454 418 aaKnown RBP6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 PRKAG1P54619 331 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 COPZ1P61923 177 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 GPLD1P80108 840 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 MRPS22P82650 360 aaKnown RBP6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 SREBF2Q12772 1141 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 PPIGQ13427 754 aaKnown RBP eCLIP6.32□□□□□ -1.45e-7■■□□□ 14.2
TM9SF4-202ENST00000398022 SELPLGQ14242 412 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 PRPSAP1Q14558 356 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 ZNF273Q14593 569 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 MED22Q15528 200 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 SV2CQ496J9 727 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 NOL9Q5SY16 702 aaKnown RBP6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 NCBP2-AS2Q69YL0 99 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 UGT3A1Q6NUS8 523 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 CFAP77Q6ZQR2 320 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 PGAM4Q8N0Y7 254 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 FAM86B1Q8N7N1 296 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 SETD6Q8TBK2 473 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 RLN3Q8WXF3 142 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 P2RY11Q96G91 374 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 LGMNQ99538 433 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 NPDC1Q9NQX5 325 aaPredicted RBP6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 BIN3Q9NQY0 253 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 PRMT8Q9NR22 394 aaPredicted RBP6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 ABCB8Q9NUT2 735 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 PARPBPQ9NWS1 579 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 PPP4R1LQ9P1A2 415 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 TP53TG5Q9Y2B4 290 aa6.32□□□□□ -1.4
TM9SF4-202ENST00000398022 E9PAM4 449 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 C22orf31O95567 290 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 HOXD4P09016 255 aaPredicted RBP6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 ZNF806P0C7X5 589 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 JMJD7P0C870 316 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 GOT1P17174 413 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 PSMC3P17980 439 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 SRMP19623 302 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 EDNRBP24530 442 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 ADORA2AP29274 412 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 ATP5IP56385 69 aaPredicted RBP6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 SLC10A2Q12908 348 aaPredicted RBP6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 NAE1Q13564 534 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 MPPE1Q53F39 396 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 CCNYL2Q5T2Q4 361 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 NAPEPLDQ6IQ20 393 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 CMC1Q7Z7K0 106 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 CATSPERDQ86XM0 798 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 LACC1Q8IV20 430 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 SLC35F3Q8IY50 421 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 PSMA8Q8TAA3 256 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 SNX33Q8WV41 574 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 SLC35F5Q8WV83 523 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 TRIB2Q92519 343 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 SPSB4Q96A44 273 aa6.31□□□□□ -1.4
TM9SF4-202ENST00000398022 HSFY1Q96LI6 401 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms