RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 SLC25A25Q6KCM7 469 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 ALKBH2Q6NS38 261 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 ZNF529Q6P280 563 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 DPY19L3Q6ZPD9 716 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 CDHR3Q6ZTQ4 885 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 DCUN1D3Q8IWE4 304 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 SPATA9Q9BWV2 254 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 VRTNQ9H8Y1 702 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 EXTL2Q9UBQ6 330 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 AFDNP55196 1824 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 OR6C6A6NF89 314 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 EEDO75530 441 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 HOXD8P13378 290 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 HOXC12P31275 282 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 MAP2K3P46734 347 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 MAD2L1BPQ15013 274 aaPredicted RBP9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 TRAM1Q15629 374 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 COQ5Q5HYK3 327 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 NOXRED1Q6NXP6 359 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 PAPD4Q6PIY7 484 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 ZFAND4Q86XD8 727 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 SLC44A3Q8N4M1 653 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 OR9A1PQ8NGU1 263 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 MOAP1Q96BY2 351 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 CCDC74BQ96LY2 380 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 TMEM175Q9BSA9 504 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 WDR45Q9Y484 360 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 HSPE1-MOB4S4R3N1 261 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 DUOX1Q9NRD9 1551 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 FAAHO00519 579 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 UQCRC2P22695 453 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 HSD11B1P28845 292 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 LASP1Q14847 261 aaKnown RBP9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 PDGFRLQ15198 375 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 LIPJQ5W064 366 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 Q6ZVU0 165 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 ARHGAP12Q8IWW6 846 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 BBS10Q8TAM1 723 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 CNIH3Q8TBE1 160 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 STK35Q8TDR2 534 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 DPF1Q92782 380 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 KLK6Q92876 244 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 LGALS12Q96DT0 336 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 SMURF1Q9HCE7 757 aa9.88□□□□□ -0.83
LIMCH1-203ENST00000396595 A0A0J9YVX5 310 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 CBY3A6NI87 242 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 SCDO00767 359 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 MT-ND2P03891 347 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 CD1DP15813 335 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 ZNF8P17098 575 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 AGTR2P50052 363 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 ERVK-25P63136 954 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 E2F1Q01094 437 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 PPIGQ13427 754 aaKnown RBP eCLIP9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 DGLUCYQ7Z3D6 616 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 ZNF283Q8N7M2 679 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 C1orf74Q96LT6 269 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 DOHHQ9BU89 302 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 KDELR2P33947 212 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 ETV5P41161 510 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 MAGEA11P43364 429 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 CD47Q08722 323 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 STEAP4Q687X5 459 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 TIGD3Q6B0B8 471 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 FCRL3Q96P31 734 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 MCHR1Q99705 422 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 PPIL3Q9H2H8 161 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 SLC28A3Q9HAS3 691 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 ABI3Q9P2A4 366 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 ERVK-18Q9QC07 812 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 PCDHB11Q9Y5F2 797 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 MEN1O00255 615 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 HSPA12AO43301 675 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 UNC50Q53HI1 259 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 SLC27A4Q6P1M0 643 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 C22orf39Q6P5X5 142 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 OTOP2Q7RTS6 562 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 TMEM135Q86UB9 458 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 REM2Q8IYK8 340 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 SLC7A5P1Q8MH63 180 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 CPNE2Q96FN4 548 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 POLMQ9NP87 494 aaPredicted RBP9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 Q9Y3F1 56 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 ARVCFO00192 962 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 CNTN5O94779 1100 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 BPNT1O95861 308 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 CSTBP04080 98 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 IL3P08700 152 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 ANXA3P12429 323 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 CELP19835 753 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 ALDH3B1P43353 468 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 ETV1P50549 477 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 NCS1P62166 190 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 GRB7Q14451 532 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 PCBP2Q15366 365 aaKnown RBP eCLIP9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 CEP68Q76N32 757 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 RASGEF1AQ8N9B8 481 aa9.87□□□□□ -0.83
LIMCH1-203ENST00000396595 NEIL3Q8TAT5 605 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms