RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 NAA30Q147X3 362 aaPredicted RBP15.42■□□□□ 0.06
PTPRK-208ENST00000392449 CMPK2Q5EBM0 449 aa15.42■□□□□ 0.06
PTPRK-208ENST00000392449 CDKL4Q5MAI5 379 aa15.42■□□□□ 0.06
PTPRK-208ENST00000392449 UBAP2Q5T6F2 1119 aaKnown RBP15.42■□□□□ 0.06
PTPRK-208ENST00000392449 ZNF473Q8WTR7 871 aaKnown RBP15.42■□□□□ 0.06
PTPRK-208ENST00000392449 PTPMT1Q8WUK0 201 aaPredicted RBP15.42■□□□□ 0.06
PTPRK-208ENST00000392449 MRRFQ96E11 262 aaKnown RBP15.42■□□□□ 0.06
PTPRK-208ENST00000392449 ATOH8Q96SQ7 321 aa15.42■□□□□ 0.06
PTPRK-208ENST00000392449 MS4A8Q9BY19 250 aa15.42■□□□□ 0.06
PTPRK-208ENST00000392449 MRPS33Q9Y291 106 aaKnown RBP15.42■□□□□ 0.06
PTPRK-208ENST00000392449 HRH3Q9Y5N1 445 aa15.42■□□□□ 0.06
PTPRK-208ENST00000392449 ESYT3A0FGR9 886 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 ENO4A6NNW6 628 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 PDE9AO76083 593 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 TGFB1P01137 390 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 ATP5A1P25705 553 aaKnown RBP15.41■□□□□ 0.06
PTPRK-208ENST00000392449 MAGEA4P43358 317 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 SSR4P51571 173 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 ELAVL1Q15717 326 aaKnown RBP15.41■□□□□ 0.06
PTPRK-208ENST00000392449 GRTP1Q5TC63 336 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 XKRXQ6PP77 449 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 IL20RBQ6UXL0 311 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 CYS1Q717R9 158 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 LRRC70Q7Z2Q7 622 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 ACOT4Q8N9L9 421 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 OR52N2Q8NGI0 321 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 NXNL1Q96CM4 212 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 SEC16BQ96JE7 1060 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 KCNC2Q96PR1 638 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 CCDC77Q9BR77 488 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 ALOXE3Q9BYJ1 711 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 OR8D2Q9GZM6 311 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 ERVK-11Q9UQG0 969 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 CLCA3PQ9Y6N3 262 aa15.41■□□□□ 0.06
PTPRK-208ENST00000392449 LRRC14BA6NHZ5 514 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 ZNF354AO60765 605 aaPredicted RBP15.4■□□□□ 0.06
PTPRK-208ENST00000392449 CTNSO60931 367 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 ZFAND5O76080 213 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 COX6B1P14854 86 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 SOX3P41225 446 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 KIR3DL1P43629 444 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 SMSP52788 366 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 SLC7A5Q01650 507 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 STX4Q12846 297 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 DDX39BQ13838 428 aaKnown RBP15.4■□□□□ 0.06
PTPRK-208ENST00000392449 PAGE2BQ5JRK9 111 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 SYT10Q6XYQ8 523 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 CD163Q86VB7 1156 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 OR4N5Q8IXE1 308 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 STAG3L4Q8TBR4 150 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 DOK4Q8TEW6 326 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 KCTD4Q8WVF5 259 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 ANP32BQ92688 251 aaKnown RBP15.4■□□□□ 0.06
PTPRK-208ENST00000392449 OR51B5Q9H339 312 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 NUDT4Q9NZJ9 180 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 MYOTQ9UBF9 498 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 UTP11Q9Y3A2 253 aaKnown RBP15.4■□□□□ 0.06
PTPRK-208ENST00000392449 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.4■□□□□ 0.06
PTPRK-208ENST00000392449 TACC2O95359 2948 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 ZNF407Q9C0G0 2248 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 FAM166BA8MTA8 275 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 A8MVJ9 347 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 C17orf105B2RV13 164 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 KLRC4-KLRK1H3BQV0 150 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 CDK2AP1O14519 115 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 KERAO60938 352 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 PRKRAO75569 313 aaKnown RBP15.4■□□□□ 0.06
PTPRK-208ENST00000392449 ETHE1O95571 254 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 TPOP07202 933 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 GSTA2P09210 222 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 MTHFD2P13995 350 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 CASQ1P31415 396 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 HK2P52789 917 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 ILF2Q12905 390 aaKnown RBP15.4■□□□□ 0.06
PTPRK-208ENST00000392449 LAPTM5Q13571 262 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 TBCCQ15814 346 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 HIST2H2ACQ16777 129 aaPredicted RBP15.4■□□□□ 0.06
PTPRK-208ENST00000392449 HIST2H2AA3Q6FI13 130 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 TBC1D1Q86TI0 1168 aaPredicted RBP15.4■□□□□ 0.06
PTPRK-208ENST00000392449 CENPLQ8N0S6 344 aaPredicted RBP15.4■□□□□ 0.06
PTPRK-208ENST00000392449 TMEM132CQ8N3T6 1108 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 MARVELD2Q8N4S9 558 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 POGLUT1Q8NBL1 392 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 PSD4Q8NDX1 1056 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 OR7G3Q8NG95 312 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 ASB15Q8WXK1 588 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 ANKRD9Q96BM1 317 aaPredicted RBP15.4■□□□□ 0.06
PTPRK-208ENST00000392449 MTFMTQ96DP5 389 aaKnown RBP15.4■□□□□ 0.06
PTPRK-208ENST00000392449 RASL10BQ96S79 203 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 DMRTA2Q96SC8 542 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 TRIM8Q9BZR9 551 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 DEFB127Q9H1M4 99 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 LYRM4Q9HD34 91 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 CHST11Q9NPF2 352 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 HPF1Q9NWY4 346 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 OPTCQ9UBM4 332 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 VTI1BQ9UEU0 232 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 PPT2Q9UMR5 302 aa15.4■□□□□ 0.06
PTPRK-208ENST00000392449 YARS2Q9Y2Z4 477 aaKnown RBP15.4■□□□□ 0.06
PTPRK-208ENST00000392449 HMX2A2RU54 273 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms