RNA–Protein interactions for RNA: ENST00000378725.3

SSU72-203, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-203ENST00000378725 SPIN4Q56A73 249 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 CCNYL2Q5T2Q4 361 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 ATG16L1Q676U5 607 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 FAAH2Q6GMR7 532 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 GALNT18Q6P9A2 607 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 ANKRD37Q7Z713 158 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 APLFQ8IW19 511 aaPredicted RBP17.62■□□□□ 0.41
SSU72-203ENST00000378725 KIRREL3Q8IZU9 778 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 ZNF781Q8N8C0 355 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 TMEM102Q8N9M5 508 aaPredicted RBP17.62■□□□□ 0.41
SSU72-203ENST00000378725 FAM47BQ8NA70 645 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 OR11G2Q8NGC1 345 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 AGR3Q8TD06 166 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 METTL21AQ8WXB1 218 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 VPS50Q96JG6 964 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 PTCHD1Q96NR3 888 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 CCT7Q99832 543 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 MESP1Q9BRJ9 268 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 PRTFDC1Q9NRG1 225 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 MCM8Q9UJA3 840 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 MRPS33Q9Y291 106 aaKnown RBP17.62■□□□□ 0.41
SSU72-203ENST00000378725 MAN2B2Q9Y2E5 1009 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 CLDN16Q9Y5I7 305 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 PTGDR2Q9Y5Y4 395 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 LAMA5O15230 3695 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 USP24Q9UPU5 2620 aa17.62■□□□□ 0.41
SSU72-203ENST00000378725 PCSK5Q92824 1860 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 A0A1W2PR48 441 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 ARHGAP10A1A4S6 786 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 RGS14O43566 566 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 LINC00032P0C843 101 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 ACPPP15309 386 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 RPL14P50914 215 aaKnown RBP17.61■□□□□ 0.41
SSU72-203ENST00000378725 TRA2BP62995 288 aaKnown RBP17.61■□□□□ 0.41
SSU72-203ENST00000378725 RHDQ02161 417 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 TNFRSF17Q02223 184 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 KIAA0040Q15053 153 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 NSDHLQ15738 373 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 IMPG1Q17R60 797 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 C18orf63Q68DL7 685 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 BORAQ6PGQ7 559 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 OR2T11Q8NH01 316 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 APOBEC4Q8WW27 367 aaKnown RBP17.61■□□□□ 0.41
SSU72-203ENST00000378725 TTC9Q92623 222 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 ZNF75CPQ92670 426 aaPredicted RBP17.61■□□□□ 0.41
SSU72-203ENST00000378725 TSLPQ969D9 159 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 C8orf44Q96CB5 159 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 TM4SF18Q96CE8 201 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 FER1L6-AS2Q96M78 137 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 ZNF700Q9H0M5 742 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 NECTIN3Q9NQS3 549 aa17.61■□□□□ 0.41
SSU72-203ENST00000378725 IGHV1-45A0A0A0MS14 117 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 PIP5K1BO14986 540 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 MAOAP21397 527 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 TLX1P31314 330 aaPredicted RBP17.6■□□□□ 0.41
SSU72-203ENST00000378725 MAPK12P53778 367 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 RRADP55042 308 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 BTKQ06187 659 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 ACSM2AQ08AH3 577 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 LINC00303Q3SY05 128 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 XKR7Q5GH72 579 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 SPDYAQ5MJ70 313 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 DCAF10Q5QP82 559 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 ACSM2BQ68CK6 577 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 LANCL3Q6ZV70 420 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 NDUFAF7Q7L592 441 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 CPEB2Q7Z5Q1 589 aaKnown RBP17.6■□□□□ 0.41
SSU72-203ENST00000378725 EFCAB3Q8N7B9 438 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 FAM76AQ8TAV0 307 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 TANKQ92844 425 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 ING2Q9H160 280 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 RPF2Q9H7B2 306 aaKnown RBP17.6■□□□□ 0.41
SSU72-203ENST00000378725 MED4Q9NPJ6 270 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 C19orf25Q9UFG5 118 aaPredicted RBP17.6■□□□□ 0.41
SSU72-203ENST00000378725 FBXL4Q9UKA2 621 aa17.6■□□□□ 0.41
SSU72-203ENST00000378725 TCRBV16S1A1N1A0A5B0 115 aa17.59■□□□□ 0.41
SSU72-203ENST00000378725 ARGFXA6NJG6 315 aa17.59■□□□□ 0.41
SSU72-203ENST00000378725 TGFBR3LH3BV60 316 aa17.59■□□□□ 0.41
SSU72-203ENST00000378725 DYNC1I1O14576 645 aa17.59■□□□□ 0.41
SSU72-203ENST00000378725 GUCY1B2O75343 617 aa17.59■□□□□ 0.41
SSU72-203ENST00000378725 HPP00738 406 aa17.59■□□□□ 0.41
SSU72-203ENST00000378725 COX6A1P12074 109 aa17.59■□□□□ 0.41
SSU72-203ENST00000378725 NR1D1P20393 614 aa17.59■□□□□ 0.41
SSU72-203ENST00000378725 TIA1P31483 386 aaKnown RBP eCLIP17.59■□□□□ 0.41
SSU72-203ENST00000378725 BUD31P41223 144 aaPredicted RBP17.59■□□□□ 0.41
SSU72-203ENST00000378725 OCRLQ01968 901 aa17.59■□□□□ 0.41
SSU72-203ENST00000378725 PCOLCEQ15113 449 aa17.59■□□□□ 0.41
SSU72-203ENST00000378725 DDIASQ8IXT1 998 aa17.59■□□□□ 0.41
SSU72-203ENST00000378725 C7orf57Q8NEG2 295 aa17.59■□□□□ 0.41
SSU72-203ENST00000378725 EXTL1Q92935 676 aa17.59■□□□□ 0.41
SSU72-203ENST00000378725 ANKRD9Q96BM1 317 aaPredicted RBP17.59■□□□□ 0.41
SSU72-203ENST00000378725 WDR77Q9BQA1 342 aaPredicted RBP17.59■□□□□ 0.41
SSU72-203ENST00000378725 LRTM1Q9HBL6 345 aa17.59■□□□□ 0.41
SSU72-203ENST00000378725 INTS9Q9NV88 658 aaKnown RBP17.59■□□□□ 0.41
SSU72-203ENST00000378725 PNPOQ9NVS9 261 aa17.59■□□□□ 0.41
SSU72-203ENST00000378725 C1orf109Q9NX04 203 aa17.59■□□□□ 0.41
SSU72-203ENST00000378725 CCDC88CQ9P219 2028 aa17.59■□□□□ 0.41
SSU72-203ENST00000378725 PTPRQQ9UMZ3 2332 aa17.58■□□□□ 0.41
SSU72-203ENST00000378725 SYNDIG1LA6NDD5 238 aa17.58■□□□□ 0.4
SSU72-203ENST00000378725 LSM1O15116 133 aaKnown RBP17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms