RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 C9orf106Q8NAJ2 232 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 SIDT2Q8NBJ9 832 aaKnown RBP4.62□□□□□ -1.67
USP48-202ENST00000374730 UBTD2Q8WUN7 234 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 TMEM171Q8WVE6 324 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 PIH1D2Q8WWB5 315 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 ATP6V1E2Q96A05 226 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 SPSB4Q96A44 273 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 EME1Q96AY2 570 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 ZNF689Q96CS4 500 aaPredicted RBP4.62□□□□□ -1.67
USP48-202ENST00000374730 LRRC58Q96CX6 371 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 SLC45A3Q96JT2 553 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 ZNF558Q96NG5 402 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 FCRL4Q96PJ5 515 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 FYTTD1Q96QD9 318 aaKnown RBP4.62□□□□□ -1.67
USP48-202ENST00000374730 GCNAQ96QF7 691 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 SMIM14Q96QK8 99 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 LYSMD1Q96S90 227 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 HGH1Q9BTY7 390 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 OSBPL11Q9BXB4 747 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 MRPS26Q9BYN8 205 aaKnown RBP4.62□□□□□ -1.67
USP48-202ENST00000374730 GPR63Q9BZJ6 419 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 PCDHAC1Q9H158 963 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 HIPK3Q9H422 1215 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 SEMA4BQ9NPR2 832 aaPredicted RBP4.62□□□□□ -1.67
USP48-202ENST00000374730 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.62□□□□□ -1.67
USP48-202ENST00000374730 CMTM6Q9NX76 183 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 ACTR3BQ9P1U1 418 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 GALPQ9UBC7 116 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 GNPTGQ9UJJ9 305 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 LEF1Q9UJU2 399 aaPredicted RBP4.62□□□□□ -1.67
USP48-202ENST00000374730 ZNF225Q9UK10 706 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 LSM7Q9UK45 103 aaKnown RBP4.62□□□□□ -1.67
USP48-202ENST00000374730 APPL1Q9UKG1 709 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 BTRCQ9Y297 605 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 ZNF510Q9Y2H8 683 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 PKP3Q9Y446 797 aa4.62□□□□□ -1.67
USP48-202ENST00000374730 MYOFQ9NZM1 2061 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 NUP210Q8TEM1 1887 aaPredicted RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 KANSL1LA0AUZ9 987 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 DHRS12A0PJE2 317 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 TRIM43BA6NCK2 446 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 ASPDHA6ND91 283 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 AGAP14A8MT82 685 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 ISM1B1AKI9 464 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 PROB1E7EW31 1015 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 AP4M1O00189 453 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 GAPDHSO14556 408 aaPredicted RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 PRRG1O14668 218 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 RAD51BO15315 384 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 HNRNPRO43390 633 aaKnown RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 OR1I1O60431 355 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 SLC22A3O75751 556 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 FGF18O76093 207 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 WDR47O94967 919 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 OR4F21O95013 312 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 PRAMEF12O95522 483 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 IGSF6O95976 241 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 OTCP00480 354 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 CSTBP04080 98 aaKnown RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 FAM58BPP0C7Q3 252 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 LINC00032P0C843 101 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 UMPSP11172 480 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 CYP2A6P11509 494 aaPredicted RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 FCGR1AP12314 374 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 TCN1P20061 433 aaPredicted RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 JAK1P23458 1154 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 DGKAP23743 735 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 FPR3P25089 353 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 PSMA4P25789 261 aaKnown RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 PRDX3P30048 256 aaKnown RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 PRKAR1BP31321 381 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 SPAM1P38567 509 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 MAPK9P45984 424 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 RPL5P46777 297 aaKnown RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 RGS4P49798 205 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 GSK3BP49841 420 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 AGTR2P50052 363 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 CCNHP51946 323 aaPredicted RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 DIO3P55073 304 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 CCL23P55773 120 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 CDKL1Q00532 357 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 MYBPC1Q00872 1141 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 ROR2Q01974 943 aaKnown RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 EMX2Q04743 252 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 BCL2L1Q07817 233 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 FOXO1Q12778 655 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 TRAF3Q13114 568 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 PRKG2Q13237 762 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 CDH18Q13634 790 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 DAZAP2Q15038 168 aaPredicted RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 CDKN3Q16667 212 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 CNPY1Q3B7I2 92 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 TTLL9Q3SXZ7 439 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 VPS26BQ4G0F5 336 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 MPPE1Q53F39 396 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 FAM209BQ5JX69 171 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 CDKL4Q5MAI5 379 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 C6orf136Q5SQH8 315 aa4.61□□□□□ -1.67
USP48-202ENST00000374730 PTRHD1Q6GMV3 140 aaKnown RBP4.61□□□□□ -1.67
USP48-202ENST00000374730 HMBOX1Q6NT76 420 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms