RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 KIF1BO60333 1816 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ZC3H13Q5T200 1668 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 A0A087WWV3 80 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 E5RJQ4 531 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 F2RL2O00254 374 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ENSAO43768 121 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 ZNF682O95780 498 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 CRYZL1O95825 349 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 BPNT1O95861 308 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 OLFM2O95897 454 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 C7P10643 843 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ADSSP30520 456 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 FASLGP48023 281 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 PDLIM4P50479 330 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 NOMO3P69849 1222 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 FAPQ12884 760 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 MRPL28Q13084 256 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 KCNAB2Q13303 367 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 RAB31Q13636 194 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ARHGAP19Q14CB8 494 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 NOMO1Q15155 1222 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 NRF1Q16656 503 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 SLC36A2Q495M3 483 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 HENMT1Q5T8I9 393 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 GRTP1Q5TC63 336 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 SULT1C3Q6IMI6 304 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 TTC27Q6P3X3 843 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 IFNEQ86WN2 208 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 NRROSQ86YC3 692 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ZNF283Q8N7M2 679 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 FNDC5Q8NAU1 212 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 FIBINQ8TAL6 211 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 XAGE5Q8WWM1 108 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 RTP4Q96DX8 246 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 GRAMD2BQ96HH9 432 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 KCNK16Q96T55 309 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 PAPOLGQ9BWT3 736 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 AGO3Q9H9G7 860 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 POLD4Q9HCU8 107 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 C1RLQ9NZP8 487 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 RNF215Q9Y6U7 377 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ZNF587BE7ETH6 402 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ATP8B1O43520 1251 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 PRAMEF2O60811 474 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 FCGR1AP12314 374 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 COX4I1P13073 169 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 POU2F1P14859 743 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 TIMP2P16035 220 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 PGAM1P18669 254 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 AHRP35869 848 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 EIF1AXP47813 144 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 CRISP3P54108 245 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 PRPS1P60891 318 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 VBP1P61758 197 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 PPIAP62937 165 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 CAMK2BQ13554 666 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ADGRE1Q14246 886 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 CRYMQ14894 314 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 TRAM2Q15035 370 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 SF3A2Q15428 464 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 TAF1AQ15573 450 aaPredicted RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 TSNQ15631 228 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 SGCAQ16586 387 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 TTC33Q6PID6 262 aaPredicted RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 KCNMB4Q86W47 210 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 IRF2BP1Q8IU81 584 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 CRYBG2Q8N1P7 616 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 OR1E3Q8WZA6 343 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 KAT2AQ92830 837 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 KAT5Q92993 513 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 EXOSC8Q96B26 276 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 PCED1BQ96HM7 432 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 CYP2S1Q96SQ9 504 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ZNF670Q9BS34 389 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 KIFC1Q9BW19 673 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 SCNM1Q9BWG6 230 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 GON7Q9BXV9 100 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 TRIM8Q9BZR9 551 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ZBP1Q9H171 429 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 EVA1AQ9H8M9 152 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 OR6C2Q9NZP2 312 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ACTR3BQ9P1U1 418 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 PCDHA7Q9UN72 937 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 WBP11Q9Y2W2 641 aaKnown RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 ZNF175Q9Y473 711 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 CLIC4Q9Y696 253 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ELOVL7A1L3X0 281 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 SULT2B1O00204 365 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 SLC16A5O15375 505 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 LYPLA1O75608 230 aaPredicted RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 CLEC3BP05452 202 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 PORP16435 677 aaPredicted RBP3.92□□□□□ -1.78
USH2A-202ENST00000366942 EMP3P54852 163 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 SLC7A9P82251 487 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 SCRN1Q12765 414 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 ABRAXAS2Q15018 415 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 C18orf63Q68DL7 685 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 SLC30A6Q6NXT4 461 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 C5orf46Q6UWT4 87 aa3.92□□□□□ -1.78
USH2A-202ENST00000366942 LINGO4Q6UY18 593 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms