RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 SCYL1Q96KG9 808 aa12.81□□□□□ -0.36
VPS29-201ENST00000360579 TSNARE1Q96NA8 513 aa12.81□□□□□ -0.36
VPS29-201ENST00000360579 NDNQ99608 321 aa12.81□□□□□ -0.36
VPS29-201ENST00000360579 DESI2Q9BSY9 194 aa12.81□□□□□ -0.36
VPS29-201ENST00000360579 SPNS1Q9H2V7 528 aa12.81□□□□□ -0.36
VPS29-201ENST00000360579 LIN28AQ9H9Z2 209 aaKnown RBP12.81□□□□□ -0.36
VPS29-201ENST00000360579 NEUROD4Q9HD90 331 aa12.81□□□□□ -0.36
VPS29-201ENST00000360579 KCNE2Q9Y6J6 123 aa12.81□□□□□ -0.36
VPS29-201ENST00000360579 JMJD1CQ15652 2540 aa12.8□□□□□ -0.36
VPS29-201ENST00000360579 B3GALT2O43825 422 aa12.8□□□□□ -0.36
VPS29-201ENST00000360579 IFNA16P05015 189 aa12.8□□□□□ -0.36
VPS29-201ENST00000360579 CELA3AP09093 270 aa12.8□□□□□ -0.36
VPS29-201ENST00000360579 SAT1P21673 171 aa12.8□□□□□ -0.36
VPS29-201ENST00000360579 BMP5P22003 454 aa12.8□□□□□ -0.36
VPS29-201ENST00000360579 GSTM2P28161 218 aa12.8□□□□□ -0.36
VPS29-201ENST00000360579 HOXC12P31275 282 aa12.8□□□□□ -0.36
VPS29-201ENST00000360579 HK2P52789 917 aa12.8□□□□□ -0.36
VPS29-201ENST00000360579 CCZ1BP86790 482 aa12.8□□□□□ -0.36
VPS29-201ENST00000360579 CCZ1P86791 482 aaPredicted RBP12.8□□□□□ -0.36
VPS29-201ENST00000360579 TIAL1Q01085 375 aaKnown RBP eCLIP12.8□□□□□ -0.36
VPS29-201ENST00000360579 GPS1Q13098 491 aa12.8□□□□□ -0.36
VPS29-201ENST00000360579 NXPE4Q6UWF7 544 aa12.8□□□□□ -0.36
VPS29-201ENST00000360579 TMPRSS11BQ86T26 416 aa12.8□□□□□ -0.36
VPS29-201ENST00000360579 KIF18BQ86Y91 864 aa12.8□□□□□ -0.36
VPS29-201ENST00000360579 C7orf57Q8NEG2 295 aa12.8□□□□□ -0.36
VPS29-201ENST00000360579 SH3GL2Q99962 352 aa12.8□□□□□ -0.36
VPS29-201ENST00000360579 IARS2Q9NSE4 1012 aaKnown RBP12.8□□□□□ -0.36
VPS29-201ENST00000360579 CLDN16Q9Y5I7 305 aa12.8□□□□□ -0.36
VPS29-201ENST00000360579 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.8□□□□□ -0.36
VPS29-201ENST00000360579 TUBAL3A6NHL2 446 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 C4orf51C9J302 202 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 TGFBR3LH3BV60 316 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 NRDCO43847 1150 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 GUCA1CO95843 209 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 FGGP02679 453 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 HEXAP06865 529 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 EPXP11678 715 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 DNASE1L1P49184 302 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 VPS41P49754 854 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 ZNF75DP51815 510 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 RNF4P78317 190 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 STX4Q12846 297 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 RUNX2Q13950 521 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 EFTUD2Q15029 972 aaKnown RBP eCLIP12.79□□□□□ -0.363e-9■■■□□ 18.5
VPS29-201ENST00000360579 TRIP13Q15645 432 aaPredicted RBP12.79□□□□□ -0.36
VPS29-201ENST00000360579 ANKRD22Q5VYY1 191 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 SHEQ5VZ18 495 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 Q71RC1 249 aaPredicted RBP12.79□□□□□ -0.36
VPS29-201ENST00000360579 MAATS1Q7Z4T9 603 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 THOC6Q86W42 341 aaKnown RBP12.79□□□□□ -0.36
VPS29-201ENST00000360579 ULK2Q8IYT8 1036 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 RELL2Q8NC24 303 aaPredicted RBP12.79□□□□□ -0.36
VPS29-201ENST00000360579 C2CD4AQ8NCU7 369 aaPredicted RBP12.79□□□□□ -0.36
VPS29-201ENST00000360579 SERPINB12Q96P63 405 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 SMR3AQ99954 134 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 CNPPD1Q9BV87 410 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 BEX4Q9NWD9 120 aaPredicted RBP12.79□□□□□ -0.36
VPS29-201ENST00000360579 QPCTLQ9NXS2 382 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 TUBA8Q9NY65 449 aaPredicted RBP12.79□□□□□ -0.36
VPS29-201ENST00000360579 SPRR3Q9UBC9 169 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 ZNF629Q9UEG4 869 aaPredicted RBP12.79□□□□□ -0.36
VPS29-201ENST00000360579 VTI1BQ9UEU0 232 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 BOKQ9UMX3 212 aaPredicted RBP12.79□□□□□ -0.36
VPS29-201ENST00000360579 ATG4BQ9Y4P1 393 aa12.79□□□□□ -0.36
VPS29-201ENST00000360579 CTAGE15A4D2H0 777 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 ERI3O43414 337 aaKnown RBP12.78□□□□□ -0.36
VPS29-201ENST00000360579 CTNSO60931 367 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 CCL3P10147 92 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 ENDOUP21128 410 aaKnown RBP12.78□□□□□ -0.36
VPS29-201ENST00000360579 TACR1P25103 407 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 CDKN2DP55273 166 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 SERTAD2Q14140 314 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 SF3B4Q15427 424 aaKnown RBP eCLIP12.78□□□□□ -0.362e-7■■■■□ 25.8
VPS29-201ENST00000360579 MPEG1Q2M385 716 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 CTAGE6Q86UF2 777 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 TMEM139Q8IV31 216 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 KLHDC8AQ8IYD2 350 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 LIX1Q8N485 282 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 FAM47BQ8NA70 645 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 PTPMT1Q8WUK0 201 aaPredicted RBP12.78□□□□□ -0.36
VPS29-201ENST00000360579 NUDT8Q8WV74 236 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 KIAA1191Q96A73 305 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 MS4A6EQ96DS6 147 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 ARSGQ96EG1 525 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 OR8D2Q9GZM6 311 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 AICDAQ9GZX7 198 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 ZNF703Q9H7S9 590 aaPredicted RBP12.78□□□□□ -0.36
VPS29-201ENST00000360579 ZFP64Q9NPA5 681 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 ACKR4Q9NPB9 350 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 COPS7AQ9UBW8 275 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 GUCA1BQ9UMX6 200 aa12.78□□□□□ -0.36
VPS29-201ENST00000360579 LRIT2A6NDA9 550 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 AHRRA9YTQ3 701 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 GOLGA8MH3BSY2 632 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 H2AFYO75367 372 aaKnown RBP12.77□□□□□ -0.37
VPS29-201ENST00000360579 IL2RAP01589 272 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 KRT14P02533 472 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 GNAZP19086 355 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 TNNI3P19429 210 aa12.77□□□□□ -0.37
VPS29-201ENST00000360579 CEACAM8P31997 349 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms