RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 STON1Q9Y6Q2 735 aa19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 ENPP4Q9Y6X5 453 aa19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 NUMA1Q14980 2115 aa19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 KIF26AQ9ULI4 1882 aaPredicted RBP19.83■□□□□ 0.76
CCDC88B-203ENST00000359902 A8MVJ9 347 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 J3QRK9 145 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 FUCA1P04066 466 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 HEPACAMQ14CZ8 416 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 ZNF605Q86T29 641 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 P2RY8Q86VZ1 359 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 OR9Q2Q8NGE9 314 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 CERS4Q9HA82 394 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 PLCXD1Q9NUJ7 323 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 C5AR2Q9P296 337 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 SERGEFQ9UGK8 458 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 PDPK1O15530 556 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 PCBP4P57723 403 aaKnown RBP19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 MLIPQ5VWP3 458 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 UBE3DQ7Z6J8 389 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 CCDC103Q8IW40 242 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 NATD1Q8N6N6 113 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 SLC38A5Q8WUX1 472 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 ABTB1Q969K4 478 aaPredicted RBP19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 PLA2G2FQ9BZM2 168 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 RSPH9Q9H1X1 276 aaPredicted RBP19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 PSORS1C1Q9UIG5 152 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 ACSL5Q9ULC5 683 aa19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 FAM32AQ9Y421 112 aaKnown RBP19.82■□□□□ 0.76
CCDC88B-203ENST00000359902 OR2A25A4D2G3 310 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 OR1F1O43749 312 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 TMPRSS11DO60235 418 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 LCMT2O60294 686 aaKnown RBP19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 LCKP06239 509 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 SERPINB1P30740 379 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 TRIM23P36406 574 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 AGERQ15109 404 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 TNFAIP8L2Q6P589 184 aaPredicted RBP19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 C16orf87Q6PH81 154 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 NDNFQ8TB73 568 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 QRFPRQ96P65 431 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 FERD3LQ96RJ6 166 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 INSM2Q96T92 566 aaPredicted RBP19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 COPS4Q9BT78 406 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 PITHD1Q9GZP4 211 aaPredicted RBP19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 WDR26Q9H7D7 661 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 PALMDQ9NP74 551 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 A4GALTQ9NPC4 353 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 CHCHD3Q9NX63 227 aaKnown RBP19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 ALPK3Q96L96 1907 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 B4GALT2O60909 372 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 RHCEP18577 417 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 OPRL1P41146 370 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 FRKP42685 505 aaPredicted RBP19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 LSM3P62310 102 aaKnown RBP19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 FGL2Q14314 439 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 PUM1Q14671 1186 aaKnown RBP eCLIP19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 GANABQ14697 944 aaKnown RBP19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 IRF4Q15306 451 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 MLF2Q15773 248 aaPredicted RBP19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 C2orf27AQ580R0 203 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 RPS26P11Q5JNZ5 115 aaPredicted RBP19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 UBE2UQ5VVX9 321 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 C7orf61Q8IZ16 206 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 HDDC3Q8N4P3 179 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 RGMAQ96B86 450 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 MTIF3Q9H2K0 278 aaKnown RBP19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 SIRT3Q9NTG7 399 aaPredicted RBP19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 HCN4Q9Y3Q4 1203 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 DOCK9Q9BZ29 2069 aa19.81■□□□□ 0.76
CCDC88B-203ENST00000359902 GADD45GO95257 159 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 PAK4O96013 591 aaPredicted RBP19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 ACP5P13686 325 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 VBP1P61758 197 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 CSNK1G2P78368 415 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 NUDT13Q86X67 352 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 DNAJC22Q8N4W6 341 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 SH3YL1Q96HL8 342 aaPredicted RBP19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 PSD2Q9BQI7 771 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 ZNF226Q9NYT6 803 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 ZFR2Q9UPR6 939 aaKnown RBP19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 GPR89AB7ZAQ6 455 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 NDUFS4O43181 175 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 IFNW1P05000 195 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 BCHEP06276 602 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 GPR89BP0CG08 455 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 GABRB1P18505 474 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 ALDH4A1P30038 563 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 C21orf33P30042 268 aaPredicted RBP19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 SLC19A1P41440 591 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 IDH2P48735 452 aaKnown RBP19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 HSPB3Q12988 150 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 C6orf120Q7Z4R8 191 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 SLCO6A1Q86UG4 719 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 PLD3Q8IV08 490 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 AMER3Q8N944 861 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 APOBEC4Q8WW27 367 aaKnown RBP19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 KLK6Q92876 244 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 UCN3Q969E3 161 aa19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 EXOSC8Q96B26 276 aaKnown RBP19.8■□□□□ 0.76
CCDC88B-203ENST00000359902 C12orf66Q96MD2 445 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms