RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 KIAA1211LQ6NV74 962 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 LCTLQ6UWM7 567 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 BTLAQ7Z6A9 289 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 RBM45Q8IUH3 476 aaKnown RBP9.85□□□□□ -0.83
LIMA1-201ENST00000341247 KLHDC8AQ8IYD2 350 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 TAGAPQ8N103 731 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 CACTIN-AS1Q8N1I8 211 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 DNAJC5GQ8N7S2 189 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 OR5D16Q8NGK9 328 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 UBE2E3Q969T4 207 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 TM4SF18Q96CE8 201 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 LINC00615Q96LM1 132 aaPredicted RBP9.85□□□□□ -0.83
LIMA1-201ENST00000341247 THAP10Q9P2Z0 257 aaPredicted RBP9.85□□□□□ -0.83
LIMA1-201ENST00000341247 CA5BQ9Y2D0 317 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 YBX2Q9Y2T7 364 aaKnown RBP9.85□□□□□ -0.83
LIMA1-201ENST00000341247 RWDD3Q9Y3V2 267 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 FCARP24071 287 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 PIK3CBP42338 1070 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 LEXMQ3ZCV2 418 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 UNC5DQ6UXZ4 953 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 RTL10Q7L3V2 364 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 DGLUCYQ7Z3D6 616 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 PGBD3Q8N328 593 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 OXR1Q8N573 874 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 APH1BQ8WW43 257 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 WDR34Q96EX3 536 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 COX14Q96I36 57 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 METTL2AQ96IZ6 378 aaKnown RBP9.85□□□□□ -0.83
LIMA1-201ENST00000341247 ALOXE3Q9BYJ1 711 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 PBX4Q9BYU1 374 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 KLHL31Q9H511 634 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 TRPC4Q9UBN4 977 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 NUP210Q8TEM1 1887 aaPredicted RBP9.85□□□□□ -0.83
LIMA1-201ENST00000341247 ADAMDEC1O15204 470 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 GPC1P35052 558 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 CCR8P51685 355 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 IL18R1Q13478 541 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 PDE7AQ13946 482 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 KEAP1Q14145 624 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 CLCA4Q14CN2 919 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 FAM46CQ5VWP2 391 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 METRNLQ641Q3 311 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 FAHD1Q6P587 224 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 PARM1Q6UWI2 310 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 DEF8Q6ZN54 512 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 SLCO6A1Q86UG4 719 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 C11orf74Q86VG3 221 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 CPA6Q8N4T0 437 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 XAGE5Q8WWM1 108 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 FGF14Q92915 247 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 ZNF717Q9BY31 904 aaPredicted RBP9.85□□□□□ -0.83
LIMA1-201ENST00000341247 MKRN2Q9H000 416 aaKnown RBP9.85□□□□□ -0.83
LIMA1-201ENST00000341247 ANKRA2Q9H9E1 313 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 TAS2R16Q9NYV7 291 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 AHSPQ9NZD4 102 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 TMEM9Q9P0T7 183 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 ZFR2Q9UPR6 939 aaKnown RBP9.85□□□□□ -0.83
LIMA1-201ENST00000341247 SCN3AQ9NY46 2000 aa9.85□□□□□ -0.83
LIMA1-201ENST00000341247 SOBPA7XYQ1 873 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 C5orf67F2Z3F1 127 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 M0R3G1 203 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 PDPK1O15530 556 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 SOX14O95416 240 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 HSMCR30P0CW71 290 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 FEN1P39748 380 aaKnown RBP9.84□□□□□ -0.83
LIMA1-201ENST00000341247 SSR2P43308 183 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 PCDH1Q08174 1060 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 ITGADQ13349 1161 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 E2F2Q14209 437 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 MLF2Q15773 248 aaPredicted RBP9.84□□□□□ -0.83
LIMA1-201ENST00000341247 ADPRMQ3LIE5 342 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 TSPYL5Q86VY4 417 aaPredicted RBP9.84□□□□□ -0.83
LIMA1-201ENST00000341247 CCDC103Q8IW40 242 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 PHOSPHO2Q8TCD6 241 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 SETD7Q8WTS6 366 aaKnown RBP9.84□□□□□ -0.83
LIMA1-201ENST00000341247 PHF10Q8WUB8 498 aaKnown RBP9.84□□□□□ -0.83
LIMA1-201ENST00000341247 SLC38A5Q8WUX1 472 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 EPYCQ99645 322 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 WFDC6Q9BQY6 131 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 COPS4Q9BT78 406 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 MS4A8Q9BY19 250 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 KCNK12Q9HB15 430 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 FBXL12Q9NXK8 326 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 GPR83Q9NYM4 423 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 ENPP5Q9UJA9 477 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 ANGPT4Q9Y264 503 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 PADI2Q9Y2J8 665 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 A0A1W2PS29 197 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 GADD45GO95257 159 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 KRT75O95678 551 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 IGFBP1P08833 259 aaPredicted RBP9.84□□□□□ -0.83
LIMA1-201ENST00000341247 ITIH1P19827 911 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 BSGP35613 385 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 OPRL1P41146 370 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 SGCGQ13326 291 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 TUBA3CQ13748 450 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 CTF1Q16619 201 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 TMCO5AQ8N6Q1 288 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 AQP11Q8NBQ7 271 aa9.84□□□□□ -0.83
LIMA1-201ENST00000341247 TMEM145Q8NBT3 493 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms