RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 ABCG4Q9H172 646 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 IL1RAPQ9NPH3 570 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 HEBP1Q9NRV9 189 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 ZDHHC3Q9NYG2 299 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 MEIOCA2RUB1 952 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 UPK3BL1B0FP48 263 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 UPK3BL2E5RIL1 263 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 H3BM21 787 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 PDYNP01213 254 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 ACSL1P33121 698 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 KCNC1P48547 511 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 MTAPQ13126 283 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 AAK1Q2M2I8 961 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 EXOC3L2Q2M3D2 409 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 CYP27C1Q4G0S4 372 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 WDR45BQ5MNZ6 344 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 DENND6BQ8NEG7 585 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 SETD6Q8TBK2 473 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 FAM110BQ8TC76 370 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 MSANTD3Q96H12 275 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 CTRCQ99895 268 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 GSDMCQ9BYG8 508 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 MMP28Q9H239 520 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 KLHL31Q9H511 634 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 ELOVL2Q9NXB9 296 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 PCDHGA3Q9Y5H0 932 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 LDB2O43679 373 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 AKAP8O43823 692 aaKnown RBP11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 OLFM2O95897 454 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 HLA-DPB1P04440 258 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 RPN2P04844 631 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 STOMP27105 288 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 CENPAP49450 140 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 ARF5P84085 180 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 HSPB3Q12988 150 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 RUNDC3AQ59EK9 446 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 ZNF648Q5T619 568 aaPredicted RBP11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 Q6ZVU0 165 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 GPR149Q86SP6 731 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 LYSMD2Q8IV50 215 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 CADM2Q8N3J6 435 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 SLC5A8Q8N695 610 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 DEDD2Q8WXF8 326 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 EXOSC8Q96B26 276 aaKnown RBP11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 SLC22A12Q96S37 553 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 TRMT61BQ9BVS5 477 aaKnown RBP11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 CPEB1Q9BZB8 566 aaKnown RBP11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 CHIAQ9BZP6 476 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 RACGAP1Q9H0H5 632 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 OBP2AQ9NY56 170 aa11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 NFKBIL1Q9UBC1 381 aaPredicted RBP11.06□□□□□ -0.64
CLSTN3-201ENST00000266546 CTDSP2O14595 271 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 MTX2O75431 263 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 SRCP12931 536 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 HRH2P25021 359 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 CD70P32970 193 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 PSMD4P55036 377 aaKnown RBP11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 AP1S2P56377 157 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 DSTNP60981 165 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 TGM3Q08188 693 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 CHRDL2Q6WN34 429 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 SPATC1Q76KD6 591 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 ZNF683Q8IZ20 524 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 CBARPQ8N350 705 aaPredicted RBP11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 VWA5B2Q8N398 1253 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 PSD4Q8NDX1 1056 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 SP7Q8TDD2 431 aaPredicted RBP11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 AKAP1Q92667 903 aaKnown RBP eCLIP11.05□□□□□ -0.642e-9■■■■□ 25.8
CLSTN3-201ENST00000266546 GTF2H4Q92759 462 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 COL26A1Q96A83 441 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 NECTIN4Q96NY8 510 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 ZSCAN5AQ9BUG6 496 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 BRINP2Q9C0B6 783 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 GPN1Q9HCN4 374 aaPredicted RBP11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 HCN2Q9UL51 889 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 A6NL46 340 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 SAP18O00422 153 aaKnown RBP11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 LILRB3O75022 631 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 VNN2O95498 520 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 POU2F2P09086 479 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 NFE2L1Q14494 772 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 C22orf42Q6IC83 251 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 ZNF767PQ75MW2 155 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 NRARPQ7Z6K4 114 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 FAM217AQ8IXS0 508 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 OR7G1Q8NGA0 311 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 SNX18Q96RF0 628 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 INPP5KQ9BT40 448 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 TMED9Q9BVK6 235 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 RPS6KB2Q9UBS0 482 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 ASF1AQ9Y294 204 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 HEPACAM2A8MVW5 462 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 RLN1P04808 185 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 ATXN1LP0C7T5 689 aaKnown RBP11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 PEPDP12955 493 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 NUP62P37198 522 aaPredicted RBP11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 RGS6P49758 472 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 ZNF81P51508 661 aa11.05□□□□□ -0.64
CLSTN3-201ENST00000266546 NTHL1P78549 312 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms