RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ABCB7O75027 752 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 EIF2S3P41091 472 aaKnown RBP18.41■□□□□ 0.54
UPF1-201ENST00000262803 ACADVLP49748 655 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 TCTE1Q5JU00 501 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 Q8N9G6 341 aaPredicted RBP18.41■□□□□ 0.54
UPF1-201ENST00000262803 A0A096LPI6 279 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 DNAJB5O75953 348 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 BEST1O76090 585 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 IFI30P13284 250 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 SYN1P17600 705 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 S1PR1P21453 382 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 IVDP26440 423 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 CLCA4Q14CN2 919 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 XKR5Q6UX68 686 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 AQP11Q8NBQ7 271 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 BORCS8Q96FH0 119 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 IMP4Q96G21 291 aaKnown RBP18.41■□□□□ 0.54
UPF1-201ENST00000262803 MYH10P35580 1976 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 TTC34A8MYJ7 566 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 M0R129 80 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 PMS2P3Q13401 168 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 LAPTM4AQ15012 233 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 SPERTQ8NA61 448 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 FANK1Q8TC84 345 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 THEM6Q8WUY1 208 aa18.41■□□□□ 0.54
UPF1-201ENST00000262803 TMX2-CTNND1H3BSU7 103 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 COCHO43405 550 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 TSTQ16762 297 aaKnown RBP18.4■□□□□ 0.54
UPF1-201ENST00000262803 RNF111Q6ZNA4 994 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 TMEM135Q86UB9 458 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 TCEAL3Q969E4 200 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 MRGPRX2Q96LB1 330 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 POLDIP3Q9BY77 421 aaKnown RBP18.4■□□□□ 0.54
UPF1-201ENST00000262803 MYNNQ9NPC7 610 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 DLGAP4Q9Y2H0 992 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 TMEM98Q9Y2Y6 226 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 C10orf71Q711Q0 1435 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 GIMAP1-GIMAP5A0A087WTJ2 511 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 A8MU76 341 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 IFNA7P01567 189 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 SLC35E2BP0CK96 405 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 ACRV1P26436 265 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 RBMS1P29558 406 aaKnown RBP18.4■□□□□ 0.54
UPF1-201ENST00000262803 GSCP56915 257 aaPredicted RBP18.4■□□□□ 0.54
UPF1-201ENST00000262803 RAB8AP61006 207 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 GRIK2Q13002 908 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 RIN1Q13671 783 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 FLYWCH1Q4VC44 716 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 ZNF598Q86UK7 904 aaKnown RBP18.4■□□□□ 0.54
UPF1-201ENST00000262803 PLXDC1Q8IUK5 500 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 TM9SF2Q99805 663 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 SPATA6Q9NWH7 488 aaPredicted RBP18.4■□□□□ 0.54
UPF1-201ENST00000262803 RNF13O43567 381 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 GBAP04062 536 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 ZNF267Q14586 743 aaPredicted RBP18.4■□□□□ 0.54
UPF1-201ENST00000262803 CYBRD1Q53TN4 286 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 KIAA1614Q5VZ46 1190 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 C3orf33Q6P1S2 294 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 MCHR1Q99705 422 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 GAL3ST1Q99999 423 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 C16orf70Q9BSU1 422 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 SLC6A15Q9H2J7 730 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 ALG5Q9Y673 324 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 GJE1A6NN92 205 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 ACOT7O00154 380 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 TSPAN9O75954 239 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 HNRNPKP61978 463 aaKnown RBP eCLIP18.4■□□□□ 0.544e-11■■■□□ 15.5
UPF1-201ENST00000262803 PCBP2Q15366 365 aaKnown RBP eCLIP18.4■□□□□ 0.548e-12■■■■■ 95.4
UPF1-201ENST00000262803 CYS1Q717R9 158 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 ALDH16A1Q8IZ83 802 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 NSUN5Q96P11 429 aaKnown RBP18.4■□□□□ 0.54
UPF1-201ENST00000262803 RDH8Q9NYR8 311 aa18.4■□□□□ 0.54
UPF1-201ENST00000262803 PHLPP1O60346 1717 aa18.39■□□□□ 0.54
UPF1-201ENST00000262803 C6orf47O95873 294 aa18.39■□□□□ 0.54
UPF1-201ENST00000262803 CD1DP15813 335 aa18.39■□□□□ 0.54
UPF1-201ENST00000262803 RPS15P62841 145 aaKnown RBP18.39■□□□□ 0.54
UPF1-201ENST00000262803 GRM2Q14416 872 aa18.39■□□□□ 0.54
UPF1-201ENST00000262803 TMPPEQ6ZT21 453 aa18.39■□□□□ 0.54
UPF1-201ENST00000262803 RBM12BQ8IXT5 1001 aaKnown RBP18.39■□□□□ 0.54
UPF1-201ENST00000262803 MMABQ96EY8 250 aaPredicted RBP18.39■□□□□ 0.54
UPF1-201ENST00000262803 NELL2Q99435 816 aa18.39■□□□□ 0.54
UPF1-201ENST00000262803 LEFTY1O75610 366 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 SLC10A3P09131 477 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 C7P10643 843 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 RPL6Q02878 288 aaKnown RBP18.39■□□□□ 0.53
UPF1-201ENST00000262803 SOX4Q06945 474 aaPredicted RBP18.39■□□□□ 0.53
UPF1-201ENST00000262803 ARMCX6Q7L4S7 300 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 HSPBAP1Q96EW2 488 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 NELFAQ9H3P2 528 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 PPP4R1LQ9P1A2 415 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 EPHA6Q9UF33 1036 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 A6NCN8 305 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 OXSR1O95747 527 aaPredicted RBP18.39■□□□□ 0.53
UPF1-201ENST00000262803 BCKDHAP12694 445 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 POLR2CP19387 275 aaPredicted RBP18.39■□□□□ 0.53
UPF1-201ENST00000262803 CTBP2P56545 445 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 ZFAND4Q86XD8 727 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 MOCOSQ96EN8 888 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 OR8D2Q9GZM6 311 aa18.39■□□□□ 0.53
UPF1-201ENST00000262803 DKK3Q9UBP4 350 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms