RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 FAM219BQ5XKK7 198 aa21.45■■□□□ 1.02
LSM4-201ENST00000252816 LCA5Q86VQ0 697 aa21.45■■□□□ 1.02
LSM4-201ENST00000252816 APCDD1LQ8NCL9 501 aa21.45■■□□□ 1.02
LSM4-201ENST00000252816 B3GNT7Q8NFL0 401 aa21.45■■□□□ 1.02
LSM4-201ENST00000252816 MTFMTQ96DP5 389 aaKnown RBP21.45■■□□□ 1.02
LSM4-201ENST00000252816 CDCP1Q9H5V8 836 aa21.45■■□□□ 1.02
LSM4-201ENST00000252816 HECTD1Q9ULT8 2610 aa21.45■■□□□ 1.02
LSM4-201ENST00000252816 DLX3O60479 287 aa21.44■■□□□ 1.02
LSM4-201ENST00000252816 LDB3O75112 727 aa21.44■■□□□ 1.02
LSM4-201ENST00000252816 EEDO75530 441 aaKnown RBP21.44■■□□□ 1.02
LSM4-201ENST00000252816 SLCO1A2P46721 670 aa21.44■■□□□ 1.02
LSM4-201ENST00000252816 GPR143P51810 404 aa21.44■■□□□ 1.02
LSM4-201ENST00000252816 CUL3Q13618 768 aa21.44■■□□□ 1.02
LSM4-201ENST00000252816 TUBA3CQ13748 450 aa21.44■■□□□ 1.02
LSM4-201ENST00000252816 TERF2Q15554 542 aa21.44■■□□□ 1.02
LSM4-201ENST00000252816 EIF2S3LQ2VIR3 472 aaKnown RBP21.44■■□□□ 1.02
LSM4-201ENST00000252816 LETMD1Q6P1Q0 360 aa21.44■■□□□ 1.02
LSM4-201ENST00000252816 TUBA3EQ6PEY2 450 aa21.44■■□□□ 1.02
LSM4-201ENST00000252816 MILR1Q7Z6M3 343 aa21.44■■□□□ 1.02
LSM4-201ENST00000252816 RPS19BP1Q86WX3 136 aaKnown RBP21.44■■□□□ 1.02
LSM4-201ENST00000252816 ZCCHC7Q8N3Z6 543 aaKnown RBP21.44■■□□□ 1.02
LSM4-201ENST00000252816 OR4F6Q8NGB9 312 aa21.44■■□□□ 1.02
LSM4-201ENST00000252816 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP21.44■■□□□ 1.02
LSM4-201ENST00000252816 SIGLEC12Q96PQ1 595 aa21.44■■□□□ 1.02
LSM4-201ENST00000252816 TAAR6Q96RI8 345 aa21.44■■□□□ 1.02
LSM4-201ENST00000252816 CENPKQ9BS16 269 aa21.44■■□□□ 1.02
LSM4-201ENST00000252816 ADAP2Q9NPF8 381 aa21.44■■□□□ 1.02
LSM4-201ENST00000252816 AGPAT4Q9NRZ5 378 aa21.44■■□□□ 1.02
LSM4-201ENST00000252816 ANKRD10Q9NXR5 420 aa21.44■■□□□ 1.02
LSM4-201ENST00000252816 PSD3Q9NYI0 1048 aa21.44■■□□□ 1.02
LSM4-201ENST00000252816 ZNF223Q9UK11 482 aaPredicted RBP21.44■■□□□ 1.02
LSM4-201ENST00000252816 PPIEQ9UNP9 301 aaKnown RBP21.44■■□□□ 1.02
LSM4-201ENST00000252816 GABRR3A8MPY1 467 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 PRAMEF2O60811 474 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 CPN2P22792 545 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 BSGP35613 385 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 CD96P40200 585 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 ARFIP1P53367 373 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 HNRNPH2P55795 449 aaKnown RBP21.43■■□□□ 1.02
LSM4-201ENST00000252816 VSNL1P62760 191 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 HERVK_113P63132 956 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 ID2Q02363 134 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 GGTA1PQ4G0N0 100 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 UNC50Q53HI1 259 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 FRG2Q64ET8 278 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 SH2D5Q6ZV89 423 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 LGI4Q8N135 537 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 FAM26EQ8N5C1 309 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 FAR1Q8WVX9 515 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 ANKRD9Q96BM1 317 aaPredicted RBP21.43■■□□□ 1.02
LSM4-201ENST00000252816 TMEM237Q96Q45 408 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 FRG2BQ96QU4 278 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 ERVK-6Q9BXR3 956 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 ALOXE3Q9BYJ1 711 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 ZNF225Q9UK10 706 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 PPT2Q9UMR5 302 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 ATG4BQ9Y4P1 393 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 SPACA6W5XKT8 324 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 PTPN13Q12923 2485 aa21.43■■□□□ 1.02
LSM4-201ENST00000252816 A0A0A6YYD5 115 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 TRBV11-1A0A0K0K1C0 115 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 TMPRSS11DO60235 418 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 ZNF500O60304 480 aaPredicted RBP21.42■■□□□ 1.02
LSM4-201ENST00000252816 OTCP00480 354 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 GSTA1P08263 222 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 TAC1P20366 129 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 HSD17B3P37058 310 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 MLF1P58340 268 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 ELAVL1Q15717 326 aaKnown RBP21.42■■□□□ 1.02
LSM4-201ENST00000252816 ZNF678Q5SXM1 525 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 ZNF468Q5VIY5 522 aaPredicted RBP21.42■■□□□ 1.02
LSM4-201ENST00000252816 C18orf63Q68DL7 685 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 MRM1Q6IN84 353 aaKnown RBP21.42■■□□□ 1.02
LSM4-201ENST00000252816 GPR180Q86V85 440 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 TDRPQ86YL5 185 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 MDS2Q8NDY4 140 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 EPS8L3Q8TE67 593 aaKnown RBP21.42■■□□□ 1.02
LSM4-201ENST00000252816 TRPC4APQ8TEL6 797 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 NCLNQ969V3 563 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 UTP23Q9BRU9 249 aaKnown RBP21.42■■□□□ 1.02
LSM4-201ENST00000252816 DEFB126Q9BYW3 111 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 DDX31Q9H8H2 851 aaKnown RBP21.42■■□□□ 1.02
LSM4-201ENST00000252816 ABI3Q9P2A4 366 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 VTI1BQ9UEU0 232 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 EMCNQ9ULC0 261 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 DOPEY2Q9Y3R5 2298 aa21.42■■□□□ 1.02
LSM4-201ENST00000252816 ANKUB1A6NFN9 424 aa21.41■■□□□ 1.02
LSM4-201ENST00000252816 SMIM23A6NLE4 172 aa21.41■■□□□ 1.02
LSM4-201ENST00000252816 FGF17O60258 216 aa21.41■■□□□ 1.02
LSM4-201ENST00000252816 PRKRAO75569 313 aaKnown RBP21.41■■□□□ 1.02
LSM4-201ENST00000252816 IFNA16P05015 189 aa21.41■■□□□ 1.02
LSM4-201ENST00000252816 ATP5F1P24539 256 aaPredicted RBP21.41■■□□□ 1.02
LSM4-201ENST00000252816 TPP2P29144 1249 aaPredicted RBP21.41■■□□□ 1.02
LSM4-201ENST00000252816 CLCN2P51788 898 aa21.41■■□□□ 1.02
LSM4-201ENST00000252816 TNFRSF17Q02223 184 aa21.41■■□□□ 1.02
LSM4-201ENST00000252816 CLCQ05315 142 aa21.41■■□□□ 1.02
LSM4-201ENST00000252816 STX4Q12846 297 aa21.41■■□□□ 1.02
LSM4-201ENST00000252816 OR1C1Q15619 314 aa21.41■■□□□ 1.02
LSM4-201ENST00000252816 SGO1Q5FBB7 561 aa21.41■■□□□ 1.02
LSM4-201ENST00000252816 ZNF766Q5HY98 468 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms