RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 EXOSC8Q96B26 276 aaKnown RBP19.06■□□□□ 0.64
CLN3-250ENST00000636839 ANKRD27Q96NW4 1050 aa19.06■□□□□ 0.64
CLN3-250ENST00000636839 PANX1Q96RD7 426 aa19.06■□□□□ 0.64
CLN3-250ENST00000636839 PRPF18Q99633 342 aaKnown RBP19.06■□□□□ 0.64
CLN3-250ENST00000636839 RMND5AQ9H871 391 aa19.06■□□□□ 0.64
CLN3-250ENST00000636839 NIPSNAP3AQ9UFN0 247 aaPredicted RBP19.06■□□□□ 0.64
CLN3-250ENST00000636839 PRSS51A0A1B0GVH4 220 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 A0A1W2PS29 197 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 ME2P23368 584 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 SLC14A1Q13336 389 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 PLXDC1Q8IUK5 500 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 ZCCHC7Q8N3Z6 543 aaKnown RBP19.05■□□□□ 0.64
CLN3-250ENST00000636839 ARHGEF39Q8N4T4 335 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 SRFBP1Q8NEF9 429 aaKnown RBP19.05■□□□□ 0.64
CLN3-250ENST00000636839 ATOH1Q92858 354 aaPredicted RBP19.05■□□□□ 0.64
CLN3-250ENST00000636839 RNF31Q96EP0 1072 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 LOXL4Q96JB6 756 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 SPRTNQ9H040 489 aaPredicted RBP19.05■□□□□ 0.64
CLN3-250ENST00000636839 FAM120CQ9NX05 1096 aaKnown RBP19.05■□□□□ 0.64
CLN3-250ENST00000636839 A0A096LPI6 279 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 CIB2O75838 187 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 ZBTB11O95625 1053 aaPredicted RBP19.05■□□□□ 0.64
CLN3-250ENST00000636839 AIFM1O95831 613 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 C6orf47O95873 294 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 PCSK2P16519 638 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 ALOX12P18054 663 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 PTGER1P34995 402 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 FOXM1Q08050 763 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 ZNF750Q32MQ0 723 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 ZC3H12BQ5HYM0 836 aaKnown RBP19.05■□□□□ 0.64
CLN3-250ENST00000636839 LRIF1Q5T3J3 769 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 ZNF621Q6ZSS3 439 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 R3HCC1LQ7Z5L2 792 aaKnown RBP19.05■□□□□ 0.64
CLN3-250ENST00000636839 NET1Q7Z628 596 aaPredicted RBP19.05■□□□□ 0.64
CLN3-250ENST00000636839 FAM47BQ8NA70 645 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 COL25A1Q9BXS0 654 aaPredicted RBP19.05■□□□□ 0.64
CLN3-250ENST00000636839 COPS7BQ9H9Q2 264 aaPredicted RBP19.05■□□□□ 0.64
CLN3-250ENST00000636839 PDE7BQ9NP56 450 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 RAB23Q9ULC3 237 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 NAALAD2Q9Y3Q0 740 aa19.05■□□□□ 0.64
CLN3-250ENST00000636839 PRR33A8MZF0 331 aa19.04■□□□□ 0.64
CLN3-250ENST00000636839 PROM1O43490 865 aa19.04■□□□□ 0.64
CLN3-250ENST00000636839 NPPAP01160 153 aa19.04■□□□□ 0.64
CLN3-250ENST00000636839 RPLP0P05388 317 aaKnown RBP19.04■□□□□ 0.64
CLN3-250ENST00000636839 ATXN8OSP0DMR3 200 aa19.04■□□□□ 0.64
CLN3-250ENST00000636839 HBA1P69905 142 aa19.04■□□□□ 0.64
CLN3-250ENST00000636839 LIPEQ05469 1076 aa19.04■□□□□ 0.64
CLN3-250ENST00000636839 CCNIQ14094 377 aa19.04■□□□□ 0.64
CLN3-250ENST00000636839 HEPACAMQ14CZ8 416 aa19.04■□□□□ 0.64
CLN3-250ENST00000636839 GPR19Q15760 415 aa19.04■□□□□ 0.64
CLN3-250ENST00000636839 PROX2Q3B8N5 592 aa19.04■□□□□ 0.64
CLN3-250ENST00000636839 RUNDC3AQ59EK9 446 aa19.04■□□□□ 0.64
CLN3-250ENST00000636839 SAMD4BQ5PRF9 694 aaKnown RBP19.04■□□□□ 0.64
CLN3-250ENST00000636839 STARD8Q92502 1023 aa19.04■□□□□ 0.64
CLN3-250ENST00000636839 BHLHE41Q9C0J9 482 aaPredicted RBP19.04■□□□□ 0.64
CLN3-250ENST00000636839 SYNDIG1Q9H7V2 258 aa19.04■□□□□ 0.64
CLN3-250ENST00000636839 KCMF1Q9P0J7 381 aa19.04■□□□□ 0.64
CLN3-250ENST00000636839 L3MBTL1Q9Y468 752 aa19.04■□□□□ 0.64
CLN3-250ENST00000636839 SGK494L7N484 410 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 ZSCAN9O15535 394 aaPredicted RBP19.03■□□□□ 0.64
CLN3-250ENST00000636839 SCELO95171 688 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 ANP32DO95626 131 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 TGM3Q08188 693 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 SUZ12Q15022 739 aaKnown RBP19.03■□□□□ 0.64
CLN3-250ENST00000636839 PRTGQ2VWP7 1150 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 PRAMEF17Q5VTA0 474 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 PRMT9Q6P2P2 845 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 WDR74Q6RFH5 385 aaPredicted RBP19.03■□□□□ 0.64
CLN3-250ENST00000636839 ZNF551Q7Z340 670 aaPredicted RBP19.03■□□□□ 0.64
CLN3-250ENST00000636839 OR9A4Q8NGU2 314 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 CCDC115Q96NT0 180 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 CSF3RQ99062 836 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 THUMPD3Q9BV44 507 aaKnown RBP19.03■□□□□ 0.64
CLN3-250ENST00000636839 EGFL7Q9UHF1 273 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 PCDHGA5Q9Y5G8 931 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 MN1Q10571 1320 aaPredicted RBP19.03■□□□□ 0.64
CLN3-250ENST00000636839 ACOT8O14734 319 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 ERN1O75460 977 aaKnown RBP19.03■□□□□ 0.64
CLN3-250ENST00000636839 FOLR1P15328 257 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 PNLIPP16233 465 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 GSK3BP49841 420 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 ACTR3P61158 418 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 TRA2BP62995 288 aaKnown RBP19.03■□□□□ 0.64
CLN3-250ENST00000636839 GAB1Q13480 694 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 ABHD13Q7L211 337 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 RCBTB1Q8NDN9 531 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 OR4A15Q8NGL6 344 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 IFI44Q8TCB0 444 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 PNPT1Q8TCS8 783 aaKnown RBP19.03■□□□□ 0.64
CLN3-250ENST00000636839 MTERF3Q96E29 417 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 CD180Q99467 661 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 TMEM121BQ9BXQ6 578 aaPredicted RBP19.03■□□□□ 0.64
CLN3-250ENST00000636839 TRIM4Q9C037 500 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 EPB41L1Q9H4G0 881 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 BTNL2Q9UIR0 455 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 PLCL2Q9UPR0 1127 aa19.03■□□□□ 0.64
CLN3-250ENST00000636839 RNASET2O00584 256 aaKnown RBP19.02■□□□□ 0.64
CLN3-250ENST00000636839 CKMT1AP12532 417 aa19.02■□□□□ 0.64
CLN3-250ENST00000636839 TSFMP43897 325 aaKnown RBP19.02■□□□□ 0.64
CLN3-250ENST00000636839 ARFIP1P53367 373 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms