RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 MINDY4Q4G0A6 757 aa16.8■□□□□ 0.28
CLN3-247ENST00000636351 TMEM35AQ53FP2 167 aa16.8■□□□□ 0.28
CLN3-247ENST00000636351 TNFAIP8L3Q5GJ75 292 aa16.8■□□□□ 0.28
CLN3-247ENST00000636351 KHDRBS2Q5VWX1 349 aaKnown RBP16.8■□□□□ 0.28
CLN3-247ENST00000636351 GOLGA6L1Q8N7Z2 621 aa16.8■□□□□ 0.28
CLN3-247ENST00000636351 SRFBP1Q8NEF9 429 aaKnown RBP16.8■□□□□ 0.28
CLN3-247ENST00000636351 PPP1R14CQ8TAE6 165 aa16.8■□□□□ 0.28
CLN3-247ENST00000636351 PRR7Q8TB68 274 aa16.8■□□□□ 0.28
CLN3-247ENST00000636351 WDR20Q8TBZ3 569 aa16.8■□□□□ 0.28
CLN3-247ENST00000636351 C19orf60Q96EN9 201 aa16.8■□□□□ 0.28
CLN3-247ENST00000636351 PEX11GQ96HA9 241 aa16.8■□□□□ 0.28
CLN3-247ENST00000636351 TMBIM4Q9HC24 238 aa16.8■□□□□ 0.28
CLN3-247ENST00000636351 C3orf18Q9UK00 162 aa16.8■□□□□ 0.28
CLN3-247ENST00000636351 MYO9AB2RTY4 2548 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 CCDC88CQ9P219 2028 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 IGLV3-12A0A075B6K2 115 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 VSTM2BA6NLU5 285 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 TM9SF1O15321 606 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 B3GALT2O43825 422 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 TBX6O95947 436 aaPredicted RBP16.79■□□□□ 0.28
CLN3-247ENST00000636351 ENO1P06733 434 aaKnown RBP16.79■□□□□ 0.28
CLN3-247ENST00000636351 HEXBP07686 556 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 UMODP07911 640 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 SMIM10L1P0DMW3 83 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 CERS1P27544 350 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 MAGOHP61326 146 aaKnown RBP16.79■□□□□ 0.28
CLN3-247ENST00000636351 SSPNQ14714 243 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 ADPRMQ3LIE5 342 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 ABHD17CQ6PCB6 329 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 MRGPREQ86SM8 312 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 ANKRD42Q8N9B4 389 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 METTL6Q8TCB7 284 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 AGAP11Q8TF27 550 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 SELENOMQ8WWX9 145 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 SMIM10Q96HG1 83 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 PKNOX2Q96KN3 472 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 GATA5Q9BWX5 397 aaPredicted RBP16.79■□□□□ 0.28
CLN3-247ENST00000636351 SHCBP1LQ9BZQ2 653 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 ROGDIQ9GZN7 287 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 MKL2Q9ULH7 1088 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 TSC22D4Q9Y3Q8 395 aa16.79■□□□□ 0.28
CLN3-247ENST00000636351 UQCRHLA0A096LP55 91 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 RTCAO00442 366 aaKnown RBP16.78■□□□□ 0.28
CLN3-247ENST00000636351 PEX12O00623 359 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 CHST10O43529 356 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 JRKO75564 520 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 CDC123O75794 336 aaPredicted RBP16.78■□□□□ 0.28
CLN3-247ENST00000636351 ZWINTO95229 277 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 BMP10O95393 424 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 KRT6AP02538 564 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 KRT6BP04259 564 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 UQCRHP07919 91 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 RNH1P13489 461 aaKnown RBP16.78■□□□□ 0.28
CLN3-247ENST00000636351 PTX3P26022 381 aaPredicted RBP16.78■□□□□ 0.28
CLN3-247ENST00000636351 SERPINB4P48594 390 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 KRT6CP48668 564 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 EMP2P54851 167 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 MTTPP55157 894 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 NR6A1Q15406 480 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 AP5B1Q2VPB7 878 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 C10orf62Q5T681 223 aaPredicted RBP16.78■□□□□ 0.28
CLN3-247ENST00000636351 DEPDC1Q5TB30 811 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 FAM219BQ5XKK7 198 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 FAAH2Q6GMR7 532 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 ZCCHC23Q6ZST2 131 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 TMEM151BQ8IW70 566 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 RGMAQ96B86 450 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 SERINC2Q96SA4 455 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 HBEGFQ99075 208 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 SERPINI1Q99574 410 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 PAIP2Q9BPZ3 127 aaKnown RBP16.78■□□□□ 0.28
CLN3-247ENST00000636351 TGIF2Q9GZN2 237 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 SEMA3GQ9NS98 782 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 FARSBQ9NSD9 589 aaKnown RBP16.78■□□□□ 0.28
CLN3-247ENST00000636351 ZNF225Q9UK10 706 aa16.78■□□□□ 0.28
CLN3-247ENST00000636351 PRRC2CQ9Y520 2896 aaKnown RBP16.78■□□□□ 0.28
CLN3-247ENST00000636351 WDR91A4D1P6 747 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 IDSB3KWA1 339 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 FOXE1O00358 373 aaPredicted RBP16.77■□□□□ 0.28
CLN3-247ENST00000636351 MANBAO00462 879 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 ESRRBO95718 433 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 DDAH2O95865 285 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 IGHEP01854 428 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 BPGMP07738 259 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 FHP07954 510 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 NEFHP12036 1026 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 MMP11P24347 488 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 ETV4P43268 484 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 PLEKHN1Q494U1 663 aaPredicted RBP16.77■□□□□ 0.28
CLN3-247ENST00000636351 TCHHL1Q5QJ38 904 aaPredicted RBP16.77■□□□□ 0.28
CLN3-247ENST00000636351 VWA5B1Q5TIE3 1220 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 NUDCD3Q8IVD9 361 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 SHISA5Q8N114 240 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 CA13Q8N1Q1 262 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 TBC1D20Q96BZ9 403 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 SNRNP40Q96DI7 357 aaKnown RBP16.77■□□□□ 0.28
CLN3-247ENST00000636351 QRFPRQ96P65 431 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 OR1F2PQ96R84 312 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 KCNA7Q96RP8 456 aa16.77■□□□□ 0.28
CLN3-247ENST00000636351 TBCDQ9BTW9 1192 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms