RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 PGCP20142 388 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 PRPH2P23942 346 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 GJA9P57773 515 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 ERVK-8P63133 956 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 ZNF423Q2M1K9 1284 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 MYLK3Q32MK0 819 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 TMIGD1Q6UXZ0 262 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 ZBTB46Q86UZ6 589 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 AQP11Q8NBQ7 271 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 OR8K5Q8NH50 307 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 OR5AK3PQ8NH89 298 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 DAZAP1Q96EP5 407 aaKnown RBP5.36□□□□□ -1.55
SCN1A-209ENST00000635750 SNX27Q96L92 541 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 SLC6A7Q99884 636 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 ETAA1Q9NY74 926 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 NDUFAF4Q9P032 175 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 OR2B3O76000 313 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 GTF2F2P13984 249 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 FOLR3P41439 243 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 ASPAP45381 313 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 EEFSECP57772 596 aaKnown RBP5.36□□□□□ -1.55
SCN1A-209ENST00000635750 HERVK_113P63132 956 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 ZNF92Q03936 586 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 TEAD2Q15562 447 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 GPR157Q5UAW9 335 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 LCTLQ6UWM7 567 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 TRIM46Q7Z4K8 759 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.36□□□□□ -1.55
SCN1A-209ENST00000635750 CMTM1Q8IZ96 169 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 FAM163AQ96GL9 167 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-209ENST00000635750 HNRNPABQ99729 332 aaKnown RBP5.36□□□□□ -1.55
SCN1A-209ENST00000635750 ERVK-6Q9BXR3 956 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 LRRC3Q9BY71 257 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 PDZD7Q9H5P4 517 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 PCDHAC2Q9Y5I4 1007 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 MYO5BQ9ULV0 1848 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 AURKAO14965 403 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 ALOX15BO15296 676 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 SCO2O43819 266 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 CILPO75339 1184 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 CSTAP01040 98 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 CD79AP11912 226 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 HOXD8P13378 290 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-209ENST00000635750 UGT1A4P22310 534 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 IL32P24001 234 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 GABRA3P34903 492 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 ARHGAP8P85298 464 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 DYRK1AQ13627 763 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 EGFLAMQ63HQ2 1017 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 CERS5Q8N5B7 392 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 NFKBIDQ8NI38 313 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 RAB2BQ8WUD1 216 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 FBXW5Q969U6 566 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 SGCZQ96LD1 299 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 TMEM209Q96SK2 561 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 FAIMQ9NVQ4 179 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 GIN1Q9NXP7 522 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 EMC3Q9P0I2 261 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 KLHL21Q9UJP4 597 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 SH2D7A6NKC9 451 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-209ENST00000635750 J3QRK9 145 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 GABRDO14764 452 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 SMAD9O15198 467 aaKnown RBP5.36□□□□□ -1.55
SCN1A-209ENST00000635750 SLC22A1O15245 554 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 CAPN5O15484 640 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-209ENST00000635750 SLC19A2O60779 497 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 FGF18O76093 207 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 CLEC3BP05452 202 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 SMPD1P17405 629 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 CD53P19397 219 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 TRAM2Q15035 370 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 EMC10Q5UCC4 262 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 CLNKQ7Z7G1 428 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 NRROSQ86YC3 692 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 ERI1Q8IV48 349 aaKnown RBP5.36□□□□□ -1.55
SCN1A-209ENST00000635750 OR4N5Q8IXE1 308 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 OR10T2Q8NGX3 314 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 PFDN5Q99471 154 aa5.36□□□□□ -1.55
SCN1A-209ENST00000635750 DDX4Q9NQI0 724 aaKnown RBP5.36□□□□□ -1.55
SCN1A-209ENST00000635750 MCTS1Q9ULC4 181 aaKnown RBP5.36□□□□□ -1.55
SCN1A-209ENST00000635750 VWDEQ8N2E2 1590 aa5.35□□□□□ -1.55
SCN1A-209ENST00000635750 SLC1A7O00341 560 aa5.35□□□□□ -1.55
SCN1A-209ENST00000635750 CER1O95813 267 aa5.35□□□□□ -1.55
SCN1A-209ENST00000635750 HLA-DPB1P04440 258 aa5.35□□□□□ -1.55
SCN1A-209ENST00000635750 CHRM5P08912 532 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-209ENST00000635750 SNU13P55769 128 aaKnown RBP5.35□□□□□ -1.55
SCN1A-209ENST00000635750 FAPQ12884 760 aa5.35□□□□□ -1.55
SCN1A-209ENST00000635750 MAB21L1Q13394 359 aa5.35□□□□□ -1.55
SCN1A-209ENST00000635750 MFSD13AQ14CX5 517 aa5.35□□□□□ -1.55
SCN1A-209ENST00000635750 ZNF829Q3KNS6 432 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-209ENST00000635750 CDNFQ49AH0 187 aa5.35□□□□□ -1.55
SCN1A-209ENST00000635750 LIN52Q52LA3 116 aa5.35□□□□□ -1.55
SCN1A-209ENST00000635750 ARL13AQ5H913 290 aaPredicted RBP5.35□□□□□ -1.55
SCN1A-209ENST00000635750 CTU1Q7Z7A3 348 aaKnown RBP5.35□□□□□ -1.55
SCN1A-209ENST00000635750 PIGWQ7Z7B1 504 aa5.35□□□□□ -1.55
SCN1A-209ENST00000635750 KBTBD6Q86V97 674 aa5.35□□□□□ -1.55
SCN1A-209ENST00000635750 RDH10Q8IZV5 341 aa5.35□□□□□ -1.55
SCN1A-209ENST00000635750 LGI4Q8N135 537 aa5.35□□□□□ -1.55
SCN1A-209ENST00000635750 NETO2Q8NC67 525 aa5.35□□□□□ -1.55
SCN1A-209ENST00000635750 DBF4BQ8NFT6 615 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms