RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 GOLM1Q8NBJ4 401 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 IGFBPL1Q8WX77 278 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 HS3ST6Q96QI5 342 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 TIMP4Q99727 224 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 RHBGQ9H310 441 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 ACKR4Q9NPB9 350 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 CATSPERZQ9NTU4 200 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 GALPQ9UBC7 116 aa12.77□□□□□ -0.37
SNX1-214ENST00000625244 NCKAP5O14513 1909 aa12.76□□□□□ -0.37
SNX1-214ENST00000625244 NIPSNAP2O75323 286 aa12.76□□□□□ -0.37
SNX1-214ENST00000625244 SYF2O95926 243 aaKnown RBP12.76□□□□□ -0.37
SNX1-214ENST00000625244 CATP04040 527 aaKnown RBP12.76□□□□□ -0.37
SNX1-214ENST00000625244 RPS3P23396 243 aaKnown RBP eCLIP12.76□□□□□ -0.37
SNX1-214ENST00000625244 HK2P52789 917 aa12.76□□□□□ -0.37
SNX1-214ENST00000625244 EIF3BP55884 814 aaKnown RBP12.76□□□□□ -0.37
SNX1-214ENST00000625244 CRYZQ08257 329 aaKnown RBP12.76□□□□□ -0.37
SNX1-214ENST00000625244 FOXF2Q12947 444 aa12.76□□□□□ -0.37
SNX1-214ENST00000625244 PEX26Q7Z412 305 aa12.76□□□□□ -0.37
SNX1-214ENST00000625244 LIX1Q8N485 282 aa12.76□□□□□ -0.37
SNX1-214ENST00000625244 UBL4BQ8N7F7 174 aa12.76□□□□□ -0.37
SNX1-214ENST00000625244 MFSD9Q8NBP5 474 aa12.76□□□□□ -0.37
SNX1-214ENST00000625244 SGCZQ96LD1 299 aa12.76□□□□□ -0.37
SNX1-214ENST00000625244 TRIB1Q96RU8 372 aa12.76□□□□□ -0.37
SNX1-214ENST00000625244 GOLPH3Q9H4A6 298 aa12.76□□□□□ -0.37
SNX1-214ENST00000625244 LZTFL1Q9NQ48 299 aa12.76□□□□□ -0.37
SNX1-214ENST00000625244 ZNF701Q9NV72 531 aaPredicted RBP12.76□□□□□ -0.37
SNX1-214ENST00000625244 NDRG3Q9UGV2 375 aa12.76□□□□□ -0.37
SNX1-214ENST00000625244 ANAPC5Q9UJX4 755 aa12.76□□□□□ -0.37
SNX1-214ENST00000625244 AMFRQ9UKV5 643 aa12.76□□□□□ -0.37
SNX1-214ENST00000625244 RIMKLBQ9ULI2 386 aa12.76□□□□□ -0.37
SNX1-214ENST00000625244 PPP2R2CQ9Y2T4 447 aa12.76□□□□□ -0.37
SNX1-214ENST00000625244 C15orf38-AP3S2A0A0A6YYH1 394 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 MBD3L3A6NE82 208 aaPredicted RBP12.75□□□□□ -0.37
SNX1-214ENST00000625244 LRRC3CA6NJW4 275 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 TGFBR3LH3BV60 316 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 CD3EAPO15446 510 aaKnown RBP12.75□□□□□ -0.37
SNX1-214ENST00000625244 NDUFS4O43181 175 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 CEP104O60308 925 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 ERN1O75460 977 aaKnown RBP12.75□□□□□ -0.37
SNX1-214ENST00000625244 ZNF888P0CJ79 500 aaPredicted RBP12.75□□□□□ -0.37
SNX1-214ENST00000625244 CR1P17927 2039 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 IMPA1P29218 277 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 CPA2P48052 419 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 ATP5J2P56134 94 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 DUSP8Q13202 625 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 RPS6KA1Q15418 735 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 WIPI1Q5MNZ9 446 aaPredicted RBP12.75□□□□□ -0.37
SNX1-214ENST00000625244 ADGRD1Q6QNK2 874 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 ZNF662Q6ZS27 426 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 RAI1Q7Z5J4 1906 aaPredicted RBP12.75□□□□□ -0.37
SNX1-214ENST00000625244 LRRC6Q86X45 466 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 LRRC25Q8N386 305 aaPredicted RBP12.75□□□□□ -0.37
SNX1-214ENST00000625244 C9orf106Q8NAJ2 232 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 MBD3L2Q8NHZ7 208 aaPredicted RBP12.75□□□□□ -0.37
SNX1-214ENST00000625244 DOCK7Q96N67 2140 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 WFIKKN1Q96NZ8 548 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 BIRC8Q96P09 236 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 REG4Q9BYZ8 158 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 FAM129AQ9BZQ8 928 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 ZFP64Q9NPA5 681 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 CLDN16Q9Y5I7 305 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 WIF1Q9Y5W5 379 aa12.75□□□□□ -0.37
SNX1-214ENST00000625244 CD8B2A6NJW9 211 aa12.74□□□□□ -0.37
SNX1-214ENST00000625244 A8MV72 311 aaPredicted RBP12.74□□□□□ -0.37
SNX1-214ENST00000625244 MIF4GDA9UHW6 222 aaKnown RBP12.74□□□□□ -0.37
SNX1-214ENST00000625244 PSMD12O00232 456 aaPredicted RBP12.74□□□□□ -0.37
SNX1-214ENST00000625244 SPRY1O43609 319 aaPredicted RBP12.74□□□□□ -0.37
SNX1-214ENST00000625244 NDUFS3O75489 264 aa12.74□□□□□ -0.37
SNX1-214ENST00000625244 TMIGD3P0DMS9 266 aaPredicted RBP12.74□□□□□ -0.37
SNX1-214ENST00000625244 FMO4P31512 558 aa12.74□□□□□ -0.37
SNX1-214ENST00000625244 VEZF1Q14119 521 aa12.74□□□□□ -0.37
SNX1-214ENST00000625244 CLEC12BQ2HXU8 276 aa12.74□□□□□ -0.37
SNX1-214ENST00000625244 PLEKHM3Q6ZWE6 761 aa12.74□□□□□ -0.37
SNX1-214ENST00000625244 REXO1L1PQ8IX06 675 aa12.74□□□□□ -0.37
SNX1-214ENST00000625244 RASGEF1CQ8N431 466 aa12.74□□□□□ -0.37
SNX1-214ENST00000625244 KRT35Q92764 455 aa12.74□□□□□ -0.37
SNX1-214ENST00000625244 SLC30A3Q99726 388 aa12.74□□□□□ -0.37
SNX1-214ENST00000625244 PLA2G12AQ9BZM1 189 aa12.74□□□□□ -0.37
SNX1-214ENST00000625244 AMBRA1Q9C0C7 1298 aa12.74□□□□□ -0.37
SNX1-214ENST00000625244 PRDM14Q9GZV8 571 aa12.74□□□□□ -0.37
SNX1-214ENST00000625244 PROK2Q9HC23 129 aa12.74□□□□□ -0.37
SNX1-214ENST00000625244 SH2D2AQ9NP31 389 aa12.74□□□□□ -0.37
SNX1-214ENST00000625244 CAMK2AQ9UQM7 478 aa12.74□□□□□ -0.37
SNX1-214ENST00000625244 FREM3P0C091 2139 aa12.73□□□□□ -0.37
SNX1-214ENST00000625244 GRID2IPA4D2P6 1211 aa12.73□□□□□ -0.37
SNX1-214ENST00000625244 GOLGA6L9A6NEM1 432 aa12.73□□□□□ -0.37
SNX1-214ENST00000625244 RNH1P13489 461 aaKnown RBP12.73□□□□□ -0.37
SNX1-214ENST00000625244 ADRA1DP25100 572 aa12.73□□□□□ -0.37
SNX1-214ENST00000625244 LOXP28300 417 aaPredicted RBP12.73□□□□□ -0.37
SNX1-214ENST00000625244 CTNNA1P35221 906 aaKnown RBP12.73□□□□□ -0.37
SNX1-214ENST00000625244 MC3RP41968 323 aa12.73□□□□□ -0.37
SNX1-214ENST00000625244 GRIA1P42261 906 aa12.73□□□□□ -0.37
SNX1-214ENST00000625244 RWDD2BP57060 319 aa12.73□□□□□ -0.37
SNX1-214ENST00000625244 TBPL1P62380 186 aa12.73□□□□□ -0.37
SNX1-214ENST00000625244 SKP1P63208 163 aa12.73□□□□□ -0.37
SNX1-214ENST00000625244 CDH17Q12864 832 aa12.73□□□□□ -0.37
SNX1-214ENST00000625244 HSDL2Q6YN16 418 aa12.73□□□□□ -0.37
SNX1-214ENST00000625244 ZNF321PQ8N8H1 164 aa12.73□□□□□ -0.37
SNX1-214ENST00000625244 FAM71DQ8N9W8 422 aa12.73□□□□□ -0.37
SNX1-214ENST00000625244 TRIM58Q8NG06 486 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms