RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 USP7Q93009 1102 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 SLC38A2Q96QD8 506 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 TBX5Q99593 518 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 EPYCQ99645 322 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 PSD2Q9BQI7 771 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 RANGRFQ9HD47 186 aaPredicted RBP12.08□□□□□ -0.48
LIG1-221ENST00000613670 OSGIN1Q9UJX0 560 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 CFAP20Q9Y6A4 193 aaKnown RBP12.08□□□□□ -0.48
LIG1-221ENST00000613670 TRAV19A0A0A6YYK7 116 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 PRMT3O60678 531 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 DDX5P17844 614 aaKnown RBP12.08□□□□□ -0.48
LIG1-221ENST00000613670 GPR1P46091 355 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 CRISP3P54108 245 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 MLLT1Q03111 559 aaPredicted RBP12.08□□□□□ -0.48
LIG1-221ENST00000613670 GBX1Q14549 363 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 KLHL12Q53G59 568 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 LRIF1Q5T3J3 769 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 CHCHD4Q8N4Q1 142 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 WFDC5Q8TCV5 224 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 NDUFAF4Q9P032 175 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 NOX1Q9Y5S8 564 aa12.08□□□□□ -0.48
LIG1-221ENST00000613670 PRR23D1E9PI22 279 aaPredicted RBP12.07□□□□□ -0.48
LIG1-221ENST00000613670 AP3D1O14617 1153 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 AOC2O75106 756 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 PRR23D2P0DMB1 279 aaPredicted RBP12.07□□□□□ -0.48
LIG1-221ENST00000613670 POLR2EP19388 210 aaKnown RBP12.07□□□□□ -0.48
LIG1-221ENST00000613670 CD70P32970 193 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 CAV3P56539 151 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 SMIM11AP58511 58 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 FADDQ13158 208 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 PLAG1Q6DJT9 500 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 SDE2Q6IQ49 451 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 LAIR2Q6ISS4 152 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 ZNF852Q6ZMS4 543 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 CDH24Q86UP0 819 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 LHFPL3Q86UP9 236 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 KRT78Q8N1N4 520 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 SLC22A12Q96S37 553 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 MND1Q9BWT6 205 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 NLKQ9UBE8 527 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 ANK1P16157 1881 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 KMOO15229 486 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 HTR2BP41595 481 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 CTSOP43234 321 aaPredicted RBP12.07□□□□□ -0.48
LIG1-221ENST00000613670 TAS2R41P59536 307 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 RAB14P61106 215 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 CSTF1Q05048 431 aaKnown RBP12.07□□□□□ -0.48
LIG1-221ENST00000613670 PRKCDQ05655 676 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 GINS1Q14691 196 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 ZNF630Q2M218 657 aaPredicted RBP12.07□□□□□ -0.48
LIG1-221ENST00000613670 LIPJQ5W064 366 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 FRMPD2BQ6IN97 320 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 TMEM173Q86WV6 379 aaPredicted RBP12.07□□□□□ -0.48
LIG1-221ENST00000613670 TIGD4Q8IY51 512 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 LRRC17Q8N6Y2 441 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 ZNF566Q969W8 418 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 CLEC2DQ9UHP7 191 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 PLAGL1Q9UM63 463 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 ZNF638Q14966 1978 aaKnown RBP12.07□□□□□ -0.48
LIG1-221ENST00000613670 A0A1W2PRU2 124 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 ANKRD34BA5PLL1 514 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 M0R082 166 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 SERPINI2O75830 405 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 IL3P08700 152 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 GPX2P18283 190 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 GNG2P59768 71 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 GAB1Q13480 694 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 PPP2R2DQ66LE6 453 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 OTOP2Q7RTS6 562 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 MARCH9Q86YJ5 346 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 CYB5D2Q8WUJ1 264 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 GATAD2BQ8WXI9 593 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 EID2BQ96D98 161 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 SORBS1Q9BX66 1292 aaKnown RBP12.07□□□□□ -0.48
LIG1-221ENST00000613670 HOXD1Q9GZZ0 328 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 OR2AG1Q9H205 316 aa12.07□□□□□ -0.48
LIG1-221ENST00000613670 IL7P13232 177 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 SLC5A12Q1EHB4 618 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 BTBD16Q32M84 506 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 LAIR1Q6GTX8 287 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 REEP3Q6NUK4 255 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 ZNF730Q6ZMV8 503 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 ZNF551Q7Z340 670 aaPredicted RBP12.06□□□□□ -0.48
LIG1-221ENST00000613670 COMMD6Q7Z4G1 85 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 LACC1Q8IV20 430 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 COQ8BQ96D53 544 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 FCRL4Q96PJ5 515 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 RACGAP1Q9H0H5 632 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 RDH14Q9HBH5 336 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 MAN2B2Q9Y2E5 1009 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 CARD8Q9Y2G2 431 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 GPR52Q9Y2T5 361 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 ISM1B1AKI9 464 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 H7C0S8 307 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 NOS1APO75052 506 aaPredicted RBP12.06□□□□□ -0.48
LIG1-221ENST00000613670 CELP19835 753 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 HOXA9P31269 272 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 PTGER1P34995 402 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 KIAA0040Q15053 153 aa12.06□□□□□ -0.48
LIG1-221ENST00000613670 ARSIQ5FYB1 569 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms