RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 PRSS41Q7RTY9 318 aa13.52□□□□□ -0.24
USP39-220ENST00000613444 PDSS2Q86YH6 399 aa13.52□□□□□ -0.24
USP39-220ENST00000613444 FAM47BQ8NA70 645 aa13.52□□□□□ -0.24
USP39-220ENST00000613444 FAM156AQ8NDB6 213 aa13.52□□□□□ -0.24
USP39-220ENST00000613444 CIDECQ96AQ7 238 aaPredicted RBP13.52□□□□□ -0.24
USP39-220ENST00000613444 IKZF5Q9H5V7 419 aa13.52□□□□□ -0.24
USP39-220ENST00000613444 KCMF1Q9P0J7 381 aa13.52□□□□□ -0.24
USP39-220ENST00000613444 URADA6NGE7 173 aa13.52□□□□□ -0.25
USP39-220ENST00000613444 RFXANKO14593 260 aa13.52□□□□□ -0.25
USP39-220ENST00000613444 ENTPD5O75356 428 aa13.52□□□□□ -0.25
USP39-220ENST00000613444 ALOX12P18054 663 aa13.52□□□□□ -0.25
USP39-220ENST00000613444 ME2P23368 584 aa13.52□□□□□ -0.25
USP39-220ENST00000613444 TRPC1P48995 793 aa13.52□□□□□ -0.25
USP39-220ENST00000613444 PPM1FP49593 454 aaPredicted RBP13.52□□□□□ -0.25
USP39-220ENST00000613444 COL9A2Q14055 689 aaPredicted RBP13.52□□□□□ -0.25
USP39-220ENST00000613444 SUZ12Q15022 739 aaKnown RBP13.52□□□□□ -0.25
USP39-220ENST00000613444 DEFB134Q4QY38 66 aa13.52□□□□□ -0.25
USP39-220ENST00000613444 SAMD4BQ5PRF9 694 aaKnown RBP13.52□□□□□ -0.25
USP39-220ENST00000613444 ZNF574Q6ZN55 896 aaPredicted RBP13.52□□□□□ -0.25
USP39-220ENST00000613444 ABHD13Q7L211 337 aa13.52□□□□□ -0.25
USP39-220ENST00000613444 PRSS42Q7Z5A4 293 aa13.52□□□□□ -0.25
USP39-220ENST00000613444 ZNF655Q8N720 491 aaPredicted RBP13.52□□□□□ -0.25
USP39-220ENST00000613444 OR8J3Q8NGG0 315 aa13.52□□□□□ -0.25
USP39-220ENST00000613444 MAPKAP1Q9BPZ7 522 aa13.52□□□□□ -0.25
USP39-220ENST00000613444 CCDC3Q9BQI4 270 aa13.52□□□□□ -0.25
USP39-220ENST00000613444 PDE7BQ9NP56 450 aa13.52□□□□□ -0.25
USP39-220ENST00000613444 MIEF1Q9NQG6 463 aa13.52□□□□□ -0.25
USP39-220ENST00000613444 ENAMQ9NRM1 1142 aa13.52□□□□□ -0.25
USP39-220ENST00000613444 ATAD3AQ9NVI7 634 aa13.52□□□□□ -0.25
USP39-220ENST00000613444 TAS2R7Q9NYW3 318 aa13.52□□□□□ -0.25
USP39-220ENST00000613444 C5AR2Q9P296 337 aa13.52□□□□□ -0.25
USP39-220ENST00000613444 SLC22A7Q9Y694 548 aa13.52□□□□□ -0.25
USP39-220ENST00000613444 COL5A1P20908 1838 aaPredicted RBP13.51□□□□□ -0.25
USP39-220ENST00000613444 C15orf38-AP3S2A0A0A6YYH1 394 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 WASHC1A8K0Z3 465 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 H3BMH7 237 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 ACOT8O14734 319 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 PROM1O43490 865 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 PRKRAO75569 313 aaKnown RBP13.51□□□□□ -0.25
USP39-220ENST00000613444 MED26O95402 600 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 C1QCP02747 245 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 GSNP06396 782 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 DRD2P14416 443 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 MLLT3P42568 568 aaPredicted RBP13.51□□□□□ -0.25
USP39-220ENST00000613444 MTPNP58546 118 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 ACTR3P61158 418 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 RUNX2Q13950 521 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 ANXA8L1Q5VT79 327 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 FBXW10Q5XX13 1052 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 LAIR1Q6GTX8 287 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 ARPINQ7Z6K5 226 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 SHISA5Q8N114 240 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 NAT6Q93015 286 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 SLC41A2Q96JW4 573 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 PHF12Q96QT6 1004 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 SERINC2Q96SA4 455 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 TRIM4Q9C037 500 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 ROGDIQ9GZN7 287 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 SLAMF7Q9NQ25 335 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 DNAAF2Q9NVR5 837 aaKnown RBP13.51□□□□□ -0.25
USP39-220ENST00000613444 SUCOQ9UBS9 1254 aaKnown RBP13.51□□□□□ -0.25
USP39-220ENST00000613444 RAB23Q9ULC3 237 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 PLCL2Q9UPR0 1127 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 SEC16AO15027 2179 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 AIFM1O95831 613 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 HSD17B1P14061 328 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 FRKP42685 505 aaPredicted RBP13.51□□□□□ -0.25
USP39-220ENST00000613444 CCL7P80098 99 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 RIPK1Q13546 671 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 KCNAB1Q14722 419 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 C1orf146Q5VVC0 180 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 C18orf63Q68DL7 685 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 FAM180BQ6P0A1 224 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 D2HGDHQ8N465 521 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 SUMF1Q8NBK3 374 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 GOT1L1Q8NHS2 421 aaPredicted RBP13.51□□□□□ -0.25
USP39-220ENST00000613444 AURKBQ96GD4 344 aaPredicted RBP13.51□□□□□ -0.25
USP39-220ENST00000613444 PANX1Q96RD7 426 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 CPPED1Q9BRF8 314 aaPredicted RBP13.51□□□□□ -0.25
USP39-220ENST00000613444 COPS7BQ9H9Q2 264 aaPredicted RBP13.51□□□□□ -0.25
USP39-220ENST00000613444 SOHLH2Q9NX45 425 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 LYARQ9NX58 379 aaKnown RBP13.51□□□□□ -0.25
USP39-220ENST00000613444 EHD3Q9NZN3 535 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 PDP2Q9P2J9 529 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 FBXW2Q9UKT8 454 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 CES1P1Q9UKY3 287 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 ATXN7L1Q9ULK2 861 aaPredicted RBP13.51□□□□□ -0.25
USP39-220ENST00000613444 PCDHGB2Q9Y5G2 931 aa13.51□□□□□ -0.25
USP39-220ENST00000613444 C1orf226A1L170 272 aa13.5□□□□□ -0.25
USP39-220ENST00000613444 PGRMC2O15173 223 aa13.5□□□□□ -0.25
USP39-220ENST00000613444 GALR3O60755 368 aaPredicted RBP13.5□□□□□ -0.25
USP39-220ENST00000613444 CIB2O75838 187 aa13.5□□□□□ -0.25
USP39-220ENST00000613444 IL1RNP18510 177 aa13.5□□□□□ -0.25
USP39-220ENST00000613444 TCN1P20061 433 aaPredicted RBP13.5□□□□□ -0.25
USP39-220ENST00000613444 ALDH9A1P49189 494 aa13.5□□□□□ -0.25
USP39-220ENST00000613444 PCBP4P57723 403 aaKnown RBP13.5□□□□□ -0.25
USP39-220ENST00000613444 HBA1P69905 142 aa13.5□□□□□ -0.25
USP39-220ENST00000613444 HSD11B2P80365 405 aa13.5□□□□□ -0.25
USP39-220ENST00000613444 TRIM25Q14258 630 aaKnown RBP13.5□□□□□ -0.25
USP39-220ENST00000613444 SPATS1Q496A3 300 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms