RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	CDK4	P11802	303 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	PCNA	P12004	261 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	POLR2C	P19387	275 aa	Predicted RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	PRPS1L1	P21108	318 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	PCSK6	P29122	969 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	EPHA8	P29322	1005 aa	Predicted RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	S100A3	P33764	101 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	GRK3	P35626	688 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	GZMM	P51124	257 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	PHEX	P78562	749 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	PPP2R2B	Q00005	443 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	HMGCS1	Q01581	520 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	TOP3A	Q13472	1001 aa	Predicted RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	DDX39B	Q13838	428 aa	Known RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	SHB	Q15464	509 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	HLA-B	Q31612	363 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	C14orf28	Q4W4Y0	310 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	C6orf132	Q5T0Z8	1188 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	KLHL35	Q6PF15	583 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	ADCK2	Q7Z695	626 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	THAP5	Q7Z6K1	395 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	SERPINA11	Q86U17	422 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	ZCCHC7	Q8N3Z6	543 aa	Known RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	GPR156	Q8NFN8	814 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	OR10A6	Q8NH74	314 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	OR10G6	Q8NH81	332 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	HUS1B	Q8NHY5	278 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	NRBF2	Q96F24	287 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	SLC47A1	Q96FL8	570 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	LOXL4	Q96JB6	756 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	MTERF1	Q99551	399 aa	Known RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	SPATA9	Q9BWV2	254 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	BRF2	Q9HAW0	419 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	CAPN10	Q9HC96	672 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	SERHL	Q9NQF3	203 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	TMEM184C	Q9NVA4	438 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	HRASLS2	Q9NWW9	162 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	IFT80	Q9P2H3	777 aa	Predicted RBP	11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	C3orf18	Q9UK00	162 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	SNX7	Q9UNH6	387 aa		11.16	□□□□□ -0.62
VRK3-223	ENST00000601341	USP34	Q70CQ2	3546 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	CROCC	Q5TZA2	2017 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	FANCM	Q8IYD8	2048 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	GSAP	A4D1B5	854 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	C2orf74	A8MZ97	194 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	FOXE1	O00358	373 aa	Predicted RBP	11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	DPM1	O60762	260 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	CREG1	O75629	220 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	FKBP9	O95302	570 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	SERPINB1	P30740	379 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	PIK3CB	P42338	1070 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	MAGEA2	P43356	314 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	TMBIM6	P55061	237 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	CSNK1G2	P78368	415 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	REEP5	Q00765	189 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	MEF2A	Q02078	507 aa	Predicted RBP	11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	SRSF11	Q05519	484 aa	Known RBP	11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	LRRC74A	Q0VAA2	488 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	TRIM61	Q5EBN2	209 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	ERICH5	Q6P6B1	374 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	SLC23A3	Q6PIS1	610 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	ISLR2	Q6UXK2	745 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	OOSP2	Q86WS3	158 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	ZNF761	Q86XN6	746 aa	Predicted RBP	11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	HIPK1	Q86Z02	1210 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	C8orf59	Q8N0T1	100 aa	Predicted RBP	11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	CLEC4F	Q8N1N0	589 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	TBC1D19	Q8N5T2	526 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	ARL10	Q8N8L6	244 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	ZNF740	Q8NDX6	193 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	OR5K1	Q8NHB7	308 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	FIG4	Q92562	907 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	TMIGD2	Q96BF3	282 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	FBXL20	Q96IG2	436 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	SLC38A3	Q99624	504 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	DPH7	Q9BTV6	452 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	DUSP23	Q9BVJ7	150 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	SPNS1	Q9H2V7	528 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	NT5DC2	Q9H857	520 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	CXorf21	Q9HAI6	301 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	ACTR10	Q9NZ32	417 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	VPS29	Q9UBQ0	182 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	CACNA1E	Q15878	2313 aa		11.15	□□□□□ -0.62
VRK3-223	ENST00000601341	DNAH14	Q0VDD8	3507 aa		11.14	□□□□□ -0.63
VRK3-223	ENST00000601341	IGKV1-8	A0A0C4DH67	115 aa		11.14	□□□□□ -0.63
VRK3-223	ENST00000601341	OR5K3	A6NET4	321 aa		11.14	□□□□□ -0.63
VRK3-223	ENST00000601341	LILRA5	A6NI73	299 aa		11.14	□□□□□ -0.63
VRK3-223	ENST00000601341	MAGEB17	A8MXT2	336 aa		11.14	□□□□□ -0.63
VRK3-223	ENST00000601341	PRR33	A8MZF0	331 aa		11.14	□□□□□ -0.63
VRK3-223	ENST00000601341	CST1	P01037	141 aa		11.14	□□□□□ -0.63
VRK3-223	ENST00000601341	SYP	P08247	313 aa		11.14	□□□□□ -0.63
VRK3-223	ENST00000601341	UGT2B7	P16662	529 aa		11.14	□□□□□ -0.63
VRK3-223	ENST00000601341	PTPN6	P29350	595 aa		11.14	□□□□□ -0.63
VRK3-223	ENST00000601341	CDH15	P55291	814 aa		11.14	□□□□□ -0.63
VRK3-223	ENST00000601341	RAB15	P59190	212 aa		11.14	□□□□□ -0.63
VRK3-223	ENST00000601341	HPCA	P84074	193 aa		11.14	□□□□□ -0.63
VRK3-223	ENST00000601341	BROX	Q5VW32	411 aa		11.14	□□□□□ -0.63
VRK3-223	ENST00000601341	KIAA1614	Q5VZ46	1190 aa		11.14	□□□□□ -0.63
VRK3-223	ENST00000601341	ARMC6	Q6NXE6	501 aa		11.14	□□□□□ -0.63
VRK3-223	ENST00000601341	TBPL2	Q6SJ96	375 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms