RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 KIAA1191Q96A73 305 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 KCNC2Q96PR1 638 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 CSF3RQ99062 836 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 PHACTR1Q9C0D0 580 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 ROGDIQ9GZN7 287 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 RAB17Q9H0T7 212 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 TIMMDC1Q9NPL8 285 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 HPF1Q9NWY4 346 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 DAPP1Q9UN19 280 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 ERVK-11Q9UQG0 969 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 MEMO1Q9Y316 297 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 CLCA3PQ9Y6N3 262 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 SPACA6W5XKT8 324 aa9.14□□□□□ -0.95
VRK3-216ENST00000599342 DIDO1Q9BTC0 2240 aaKnown RBP9.13□□□□□ -0.95
VRK3-216ENST00000599342 PEX1O43933 1283 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 CDC40O60508 579 aaKnown RBP eCLIP9.13□□□□□ -0.95
VRK3-216ENST00000599342 ZFAND5O76080 213 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 TUBB4AP04350 444 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 SNRPB2P08579 225 aaKnown RBP9.13□□□□□ -0.95
VRK3-216ENST00000599342 PCNAP12004 261 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 PPP2R1BP30154 601 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 PTGER1P34995 402 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 MSH2P43246 934 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 HNRNPFP52597 415 aaKnown RBP9.13□□□□□ -0.95
VRK3-216ENST00000599342 PLTPP55058 493 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 GPR85P60893 370 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 CAV1Q03135 178 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 CHIT1Q13231 466 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 SERTAD2Q14140 314 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 ZKSCAN8Q15776 578 aaPredicted RBP9.13□□□□□ -0.95
VRK3-216ENST00000599342 TBCCQ15814 346 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 ADPRMQ3LIE5 342 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 ADNP2Q6IQ32 1131 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 ABHD17CQ6PCB6 329 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 VN1R5Q7Z5H4 357 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 ZNF227Q86WZ6 799 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 SULF2Q8IWU5 870 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 GPALPP1Q8IXQ4 340 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 PPM1NQ8N819 430 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 TMEM52Q8NDY8 209 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 STAG3L4Q8TBR4 150 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 AGAP11Q8TF27 550 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 ASB15Q8WXK1 588 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 DAZLQ92904 295 aaKnown RBP9.13□□□□□ -0.95
VRK3-216ENST00000599342 UBE2E3Q969T4 207 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 WDR34Q96EX3 536 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 QRFPRQ96P65 431 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 F2RL3Q96RI0 385 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 CD244Q9BZW8 370 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 ALG9Q9H6U8 611 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 NMRAL1Q9HBL8 299 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 LYRM4Q9HD34 91 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 GRHL1Q9NZI5 618 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 NUDT4Q9NZJ9 180 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 ZNF223Q9UK11 482 aaPredicted RBP9.13□□□□□ -0.95
VRK3-216ENST00000599342 PTBP2Q9UKA9 531 aaKnown RBP9.13□□□□□ -0.95
VRK3-216ENST00000599342 PPIEQ9UNP9 301 aaKnown RBP9.13□□□□□ -0.95
VRK3-216ENST00000599342 YARS2Q9Y2Z4 477 aaKnown RBP9.13□□□□□ -0.95
VRK3-216ENST00000599342 CACNA1DQ01668 2161 aa9.13□□□□□ -0.95
VRK3-216ENST00000599342 E9PLN8 166 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 TGFBR3LH3BV60 316 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 ACOT7O00154 380 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 CYR61O00622 381 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 FANCGO15287 622 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 HS6ST1O60243 411 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 PRAMEF4O60810 478 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 CTNSO60931 367 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 KERAO60938 352 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 OR2J2O76002 312 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 CLDN14O95500 239 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 TBX6O95947 436 aaPredicted RBP9.12□□□□□ -0.95
VRK3-216ENST00000599342 TPOP07202 933 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 LTA4HP09960 611 aaKnown RBP9.12□□□□□ -0.95
VRK3-216ENST00000599342 TNNI3P19429 210 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 CD22P20273 847 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 CRABP2P29373 138 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 SERPINB1P30740 379 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 CASQ1P31415 396 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 PTGS2P35354 604 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 RFC3P40938 356 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 GPX6P59796 221 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 NAB1Q13506 487 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 KBTBD12Q3ZCT8 623 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 TMEM35AQ53FP2 167 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 RNFT1Q5M7Z0 435 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 PRAMEF9Q5VWM5 478 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 MED27Q6P2C8 311 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 HSDL2Q6YN16 418 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 C3P1Q6ZMU1 363 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 CHSY3Q70JA7 882 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 CMC1Q7Z7K0 106 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 MORN4Q8NDC4 146 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 PSD4Q8NDX1 1056 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 C7orf57Q8NEG2 295 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 OR14A16Q8NHC5 309 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 C16orf52Q8NHV5 167 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 CA5BP1Q8WTZ4 195 aa9.12□□□□□ -0.95
VRK3-216ENST00000599342 PHF10Q8WUB8 498 aaKnown RBP9.12□□□□□ -0.95
VRK3-216ENST00000599342 MTFMTQ96DP5 389 aaKnown RBP9.12□□□□□ -0.95
VRK3-216ENST00000599342 UBXN10Q96LJ8 280 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms