RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 CSAG2Q9Y5P2 127 aa15.14■□□□□ 0.01
TRIM28-213ENST00000598355 SYNDIG1LA6NDD5 238 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 SAGE2PA6NJ88 616 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 FOXO6A8MYZ6 492 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 RTCAO00442 366 aaKnown RBP15.13■□□□□ 0.01
TRIM28-213ENST00000598355 SEMA3DO95025 777 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 ETHE1O95571 254 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 OTCP00480 354 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 PROCP04070 461 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 TAC1P20366 129 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 PRKAA2P54646 552 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 SLC26A5P58743 744 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 RPS13P62277 151 aaKnown RBP15.13■□□□□ 0.01
TRIM28-213ENST00000598355 PHEXP78562 749 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 SLC18A2Q05940 514 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 UNC50Q53HI1 259 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 FRG2Q64ET8 278 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 LETMD1Q6P1Q0 360 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 MYLK4Q86YV6 388 aaPredicted RBP15.13■□□□□ 0.01
TRIM28-213ENST00000598355 SLC22A9Q8IVM8 553 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 ZADH2Q8N4Q0 377 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 NFAM1Q8NET5 270 aaPredicted RBP15.13■□□□□ 0.01
TRIM28-213ENST00000598355 OR4F6Q8NGB9 312 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 MAGEB10Q96LZ2 347 aaPredicted RBP15.13■□□□□ 0.01
TRIM28-213ENST00000598355 PTCHD1Q96NR3 888 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 FRG2BQ96QU4 278 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 EPS8L2Q9H6S3 715 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 SEMA4BQ9NPR2 832 aaPredicted RBP15.13■□□□□ 0.01
TRIM28-213ENST00000598355 TRPS1Q9UHF7 1281 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 LGALS13Q9UHV8 139 aa15.13■□□□□ 0.01
TRIM28-213ENST00000598355 FLNCQ14315 2725 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 HIVEP3Q5T1R4 2406 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 G3V2L1 256 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 PPP6CO00743 305 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 PTX3P26022 381 aaPredicted RBP15.12■□□□□ 0.01
TRIM28-213ENST00000598355 CRHR1P34998 444 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 BSGP35613 385 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 SSR2P43308 183 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 OR4D2P58180 307 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 CLCQ05315 142 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 DDX39BQ13838 428 aaKnown RBP15.12■□□□□ 0.01
TRIM28-213ENST00000598355 RCN2Q14257 317 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 ERCC6LQ2NKX8 1250 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 BTBD16Q32M84 506 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 OR4C11Q6IEV9 310 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 MRM1Q6IN84 353 aaKnown RBP15.12■□□□□ 0.01
TRIM28-213ENST00000598355 CUZD1Q86UP6 607 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 ARMC10Q8N2F6 343 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 SIRT6Q8N6T7 355 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 FAM47BQ8NA70 645 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 ELP5Q8TE02 316 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 RGMAQ96B86 450 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 ZNF382Q96SR6 550 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 MAPKAP1Q9BPZ7 522 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 DDX31Q9H8H2 851 aaKnown RBP15.12■□□□□ 0.01
TRIM28-213ENST00000598355 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.12■□□□□ 0.01
TRIM28-213ENST00000598355 MRPS33Q9Y291 106 aaKnown RBP15.12■□□□□ 0.01
TRIM28-213ENST00000598355 PCDHGA10Q9Y5H3 936 aa15.12■□□□□ 0.01
TRIM28-213ENST00000598355 V9GYY5 206 aaPredicted RBP15.12■□□□□ 0.01
TRIM28-213ENST00000598355 A0A0A6YYD5 115 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 BLACEA4D250 179 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 PLIN3O60664 434 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 WISP1O95388 367 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 KRT15P19012 456 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 IMPDH1P20839 514 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 CDH13P55290 713 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 IGLV3-21P80748 117 aaPredicted RBP15.11■□□□□ 0.01
TRIM28-213ENST00000598355 AP5B1Q2VPB7 878 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 PLEKHN1Q494U1 663 aaPredicted RBP15.11■□□□□ 0.01
TRIM28-213ENST00000598355 B3GNTL1Q67FW5 361 aaPredicted RBP15.11■□□□□ 0.01
TRIM28-213ENST00000598355 ZYG11AQ6WRX3 759 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 LGI4Q8N135 537 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 APCDD1LQ8NCL9 501 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 OR2W6PQ8NHA6 318 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 HAS2Q92819 552 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 BARD1Q99728 777 aaKnown RBP15.11■□□□□ 0.01
TRIM28-213ENST00000598355 NPAS2Q99743 824 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 CENPKQ9BS16 269 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 SORBS1Q9BX66 1292 aaKnown RBP15.11■□□□□ 0.01
TRIM28-213ENST00000598355 MFRPQ9BY79 579 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 PRTFDC1Q9NRG1 225 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 PTGFRNQ9P2B2 879 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 ESPL1Q14674 2120 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 SVILO95425 2214 aa15.11■□□□□ 0.01
TRIM28-213ENST00000598355 SMIM23A6NLE4 172 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 SAP18O00422 153 aaKnown RBP15.1■□□□□ 0.01
TRIM28-213ENST00000598355 CLDN4O14493 209 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 CTNSO60931 367 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 SH3BGRLO75368 114 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 NEK2P51955 445 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 MLLT10P55197 1068 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 HNRNPH2P55795 449 aaKnown RBP15.1■□□□□ 0.01
TRIM28-213ENST00000598355 CCDC153Q494R4 210 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 MILR1Q7Z6M3 343 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 TRABD2AQ86V40 505 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 ARMC2Q8NEN0 867 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 RDH11Q8TC12 318 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 ATP6V1E2Q96A05 226 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 CCDC126Q96EE4 140 aa15.1■□□□□ 0.01
TRIM28-213ENST00000598355 SERPINI1Q99574 410 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms