RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 KCNA7Q96RP8 456 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 NPAS2Q99743 824 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 TUBB6Q9BUF5 446 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 EPN3Q9H201 632 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 PRDM9Q9NQV7 894 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 RIC8BQ9NVN3 520 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 PSD3Q9NYI0 1048 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 SLC17A7Q9P2U7 560 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 GRID1Q9ULK0 1009 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 PLLPQ9Y342 182 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 ZNF451Q9Y4E5 1061 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 PCDHGB7Q9Y5F8 929 aa10.46□□□□□ -0.73
VRK3-210ENST00000596121 GCN1Q92616 2671 aaKnown RBP10.45□□□□□ -0.74
VRK3-210ENST00000596121 A0A0A6YYD5 115 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 A8MUA0 341 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 PSMD12O00232 456 aaPredicted RBP10.45□□□□□ -0.74
VRK3-210ENST00000596121 MANBAO00462 879 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 PCDH17O14917 1159 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 SLC28A2O43868 658 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 MAN1A2O60476 641 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 PRKRAO75569 313 aaKnown RBP10.45□□□□□ -0.74
VRK3-210ENST00000596121 OTCP00480 354 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 GBAP04062 536 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 MYL2P10916 166 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 CPA3P15088 417 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 JAK1P23458 1154 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 ARL1P40616 181 aaPredicted RBP10.45□□□□□ -0.74
VRK3-210ENST00000596121 CASRP41180 1078 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 SSR2P43308 183 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 CCT5P48643 541 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 HTR6P50406 440 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 ST13P50502 369 aaKnown RBP10.45□□□□□ -0.74
VRK3-210ENST00000596121 FOXA1P55317 472 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 HNRNPH2P55795 449 aaKnown RBP10.45□□□□□ -0.74
VRK3-210ENST00000596121 OR4D2P58180 307 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 IFFO1Q0D2I5 559 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 SLAMF1Q13291 335 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 CUL3Q13618 768 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 PCLAFQ15004 111 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 AP5B1Q2VPB7 878 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 PLEKHN1Q494U1 663 aaPredicted RBP10.45□□□□□ -0.74
VRK3-210ENST00000596121 MRM1Q6IN84 353 aaKnown RBP10.45□□□□□ -0.74
VRK3-210ENST00000596121 JMJD6Q6NYC1 403 aaPredicted RBP10.45□□□□□ -0.74
VRK3-210ENST00000596121 LINC00696Q6ZRV3 163 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 PRICKLE2Q7Z3G6 844 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 CLNKQ7Z7G1 428 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 SLC22A9Q8IVM8 553 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 C10orf107Q8IVU9 208 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 SRRM1Q8IYB3 904 aaKnown RBP10.45□□□□□ -0.74
VRK3-210ENST00000596121 RIBC1Q8N443 379 aaPredicted RBP10.45□□□□□ -0.74
VRK3-210ENST00000596121 KIF2BQ8N4N8 673 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 CCNYL1Q8N7R7 359 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 CDYL2Q8N8U2 506 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 TEX19Q8NA77 164 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 SRFBP1Q8NEF9 429 aaKnown RBP10.45□□□□□ -0.74
VRK3-210ENST00000596121 ARMC2Q8NEN0 867 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 ANKRD9Q96BM1 317 aaPredicted RBP10.45□□□□□ -0.74
VRK3-210ENST00000596121 REPS1Q96D71 796 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 ZNF382Q96SR6 550 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 HBEGFQ99075 208 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 MRPL1Q9BYD6 325 aaKnown RBP10.45□□□□□ -0.74
VRK3-210ENST00000596121 TRIM4Q9C037 500 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 DDX31Q9H8H2 851 aaKnown RBP10.45□□□□□ -0.74
VRK3-210ENST00000596121 COPS7BQ9H9Q2 264 aaPredicted RBP10.45□□□□□ -0.74
VRK3-210ENST00000596121 LYRM4Q9HD34 91 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 PRTFDC1Q9NRG1 225 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 OXSMQ9NWU1 459 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 MKS1Q9NXB0 559 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 PLA2G3Q9NZ20 509 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 C5AR2Q9P296 337 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 PTGFRNQ9P2B2 879 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 TRPS1Q9UHF7 1281 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 FBXW2Q9UKT8 454 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 PPT2Q9UMR5 302 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 ATG4BQ9Y4P1 393 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 ASB4Q9Y574 426 aa10.45□□□□□ -0.74
VRK3-210ENST00000596121 A0A1W2PR48 441 aa10.44□□□□□ -0.74
VRK3-210ENST00000596121 CTNSO60931 367 aa10.44□□□□□ -0.74
VRK3-210ENST00000596121 LDB3O75112 727 aa10.44□□□□□ -0.74
VRK3-210ENST00000596121 SORBS2O94875 1100 aaKnown RBP10.44□□□□□ -0.74
VRK3-210ENST00000596121 TPP2P29144 1249 aaPredicted RBP10.44□□□□□ -0.74
VRK3-210ENST00000596121 HPDP32754 393 aaPredicted RBP10.44□□□□□ -0.74
VRK3-210ENST00000596121 GPR143P51810 404 aa10.44□□□□□ -0.74
VRK3-210ENST00000596121 RAP1GDS1P52306 607 aa10.44□□□□□ -0.74
VRK3-210ENST00000596121 NAGLUP54802 743 aa10.44□□□□□ -0.74
VRK3-210ENST00000596121 MLLT10P55197 1068 aa10.44□□□□□ -0.74
VRK3-210ENST00000596121 HSD17B7P56937 341 aa10.44□□□□□ -0.74
VRK3-210ENST00000596121 SLC26A5P58743 744 aa10.44□□□□□ -0.74
VRK3-210ENST00000596121 DNAJB13P59910 316 aa10.44□□□□□ -0.74
VRK3-210ENST00000596121 ID2Q02363 134 aa10.44□□□□□ -0.74
VRK3-210ENST00000596121 ACTN3Q08043 901 aaPredicted RBP10.44□□□□□ -0.74
VRK3-210ENST00000596121 TGM3Q08188 693 aa10.44□□□□□ -0.74
VRK3-210ENST00000596121 GALNT1Q10472 559 aaPredicted RBP10.44□□□□□ -0.74
VRK3-210ENST00000596121 TBL3Q12788 808 aaKnown RBP10.44□□□□□ -0.74
VRK3-210ENST00000596121 LCP2Q13094 533 aa10.44□□□□□ -0.74
VRK3-210ENST00000596121 BTBD16Q32M84 506 aa10.44□□□□□ -0.74
VRK3-210ENST00000596121 CCDC153Q494R4 210 aa10.44□□□□□ -0.74
VRK3-210ENST00000596121 PRR30Q53SZ7 412 aaPredicted RBP10.44□□□□□ -0.74
VRK3-210ENST00000596121 AGAP7PQ5VUJ5 663 aa10.44□□□□□ -0.74
VRK3-210ENST00000596121 C18orf63Q68DL7 685 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms