RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 NECTIN3Q9NQS3 549 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 PRDM7Q9NQW5 492 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 DAPP1Q9UN19 280 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 MRPS33Q9Y291 106 aaKnown RBP14.16□□□□□ -0.14
TRIM28-205ENST00000595028 TSC22D4Q9Y3Q8 395 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 COPG1Q9Y678 874 aaKnown RBP14.16□□□□□ -0.14
TRIM28-205ENST00000595028 TRAV17A0A0B4J275 112 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 OR5H15A6NDH6 313 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 A8MUI8 341 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 SMIM24O75264 130 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 SCELO95171 688 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 F10P00742 488 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 COL8A1P27658 744 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 EEF1DP29692 281 aaKnown RBP14.15□□□□□ -0.14
TRIM28-205ENST00000595028 PIK3CBP42338 1070 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 HNRNPFP52597 415 aaKnown RBP14.15□□□□□ -0.14
TRIM28-205ENST00000595028 HSD17B7P56937 341 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 DDX39BQ13838 428 aaKnown RBP14.15□□□□□ -0.14
TRIM28-205ENST00000595028 RCN2Q14257 317 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 ACER2Q5QJU3 275 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 TEX35Q5T0J7 233 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 LGSNQ5TDP6 509 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 KHDRBS2Q5VWX1 349 aaKnown RBP14.15□□□□□ -0.14
TRIM28-205ENST00000595028 FCRLBQ6BAA4 426 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 H3F3CQ6NXT2 135 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 ADGRD1Q6QNK2 874 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 UBE3DQ7Z6J8 389 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 CRLF3Q8IUI8 442 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 ZNF595Q8IYB9 648 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 CYP4X1Q8N118 509 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 EIF1ADQ8N9N8 165 aaKnown RBP14.15□□□□□ -0.14
TRIM28-205ENST00000595028 TMEM52Q8NDY8 209 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 HUS1BQ8NHY5 278 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 MTBPQ96DY7 904 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 CMTM7Q96FZ5 175 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 PHF12Q96QT6 1004 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 NPAS2Q99743 824 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 MRPL57Q9BQC6 102 aaKnown RBP14.15□□□□□ -0.14
TRIM28-205ENST00000595028 MRPL46Q9H2W6 279 aaKnown RBP14.15□□□□□ -0.14
TRIM28-205ENST00000595028 IPPKQ9H8X2 491 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 DMRT3Q9NQL9 472 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 PRTFDC1Q9NRG1 225 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 FETUBQ9UGM5 382 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 ADGRE2Q9UHX3 823 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 CLDN16Q9Y5I7 305 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 ZFHX3Q15911 3703 aa14.15□□□□□ -0.14
TRIM28-205ENST00000595028 H0YIV9 168 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 TGFBR3LH3BV60 316 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 RTCAO00442 366 aaKnown RBP14.14□□□□□ -0.15
TRIM28-205ENST00000595028 CYR61O00622 381 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 CLDN4O14493 209 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 SEMA7AO75326 666 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 SH3BGRLO75368 114 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 TGFB1P01137 390 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 MYBL2P10244 700 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 HIST1H1TP22492 207 aaPredicted RBP14.14□□□□□ -0.15
TRIM28-205ENST00000595028 TNFRSF8P28908 595 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 DCTP40126 519 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 SSR2P43308 183 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 TAS2R50P59544 299 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 MRPL49Q13405 166 aaKnown RBP14.14□□□□□ -0.15
TRIM28-205ENST00000595028 SLC29A2Q14542 456 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 NR6A1Q15406 480 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 TERF2Q15554 542 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 INAQ16352 499 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 RPUSD3Q6P087 351 aaKnown RBP14.14□□□□□ -0.15
TRIM28-205ENST00000595028 TIFABQ6ZNK6 161 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 CHSY3Q70JA7 882 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 TICAM1Q8IUC6 712 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 LGI4Q8N135 537 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 BEST3Q8N1M1 668 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 RNF175Q8N4F7 328 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 KIF2BQ8N4N8 673 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 SLC5A8Q8N695 610 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 ACOT4Q8N9L9 421 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 L3MBTL4Q8NA19 623 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 OR1N1Q8NGS0 311 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 ELP5Q8TE02 316 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 REPS1Q96D71 796 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 PHF21BQ96EK2 531 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 ZNF354BQ96LW1 612 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.14□□□□□ -0.15
TRIM28-205ENST00000595028 LYRM4Q9HD34 91 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 AGPAT4Q9NRZ5 378 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 PSMC3IPQ9P2W1 217 aaPredicted RBP14.14□□□□□ -0.15
TRIM28-205ENST00000595028 PCTPQ9UKL6 214 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 PCDHGA11Q9Y5H2 935 aa14.14□□□□□ -0.15
TRIM28-205ENST00000595028 IQANK1A0A1B0GTG1 560 aa14.13□□□□□ -0.15
TRIM28-205ENST00000595028 SAP18O00422 153 aaKnown RBP14.13□□□□□ -0.15
TRIM28-205ENST00000595028 OR7A17O14581 309 aa14.13□□□□□ -0.15
TRIM28-205ENST00000595028 RPS17P08708 135 aaKnown RBP14.13□□□□□ -0.15
TRIM28-205ENST00000595028 SBK3P0C264 359 aa14.13□□□□□ -0.15
TRIM28-205ENST00000595028 ATP5A1P25705 553 aaKnown RBP14.13□□□□□ -0.15
TRIM28-205ENST00000595028 ELAVL4P26378 380 aaKnown RBP14.13□□□□□ -0.15
TRIM28-205ENST00000595028 RPS13P62277 151 aaKnown RBP14.13□□□□□ -0.15
TRIM28-205ENST00000595028 PHEXP78562 749 aa14.13□□□□□ -0.15
TRIM28-205ENST00000595028 TRAF3Q13114 568 aa14.13□□□□□ -0.15
TRIM28-205ENST00000595028 SLC13A2Q13183 592 aa14.13□□□□□ -0.15
TRIM28-205ENST00000595028 CPSF6Q16630 551 aaKnown RBP eCLIP14.13□□□□□ -0.15
TRIM28-205ENST00000595028 MEP1AQ16819 746 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms