RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 CT55Q8WUE5 264 aa12.87□□□□□ -0.35
VMP1-210ENST00000589823 MIEF2Q96C03 454 aa12.87□□□□□ -0.35
VMP1-210ENST00000589823 THOC1Q96FV9 657 aaKnown RBP12.87□□□□□ -0.35
VMP1-210ENST00000589823 ZNF317Q96PQ6 595 aaPredicted RBP12.87□□□□□ -0.35
VMP1-210ENST00000589823 OR1F2PQ96R84 312 aa12.87□□□□□ -0.35
VMP1-210ENST00000589823 EBPLQ9BY08 206 aa12.87□□□□□ -0.35
VMP1-210ENST00000589823 FAM117AQ9C073 453 aa12.87□□□□□ -0.35
VMP1-210ENST00000589823 NSRP1Q9H0G5 558 aaKnown RBP12.87□□□□□ -0.35
VMP1-210ENST00000589823 SLC26A1Q9H2B4 701 aa12.87□□□□□ -0.35
VMP1-210ENST00000589823 WDR41Q9HAD4 459 aa12.87□□□□□ -0.35
VMP1-210ENST00000589823 CTSFQ9UBX1 484 aa12.87□□□□□ -0.35
VMP1-210ENST00000589823 GIMAP2Q9UG22 337 aa12.87□□□□□ -0.35
VMP1-210ENST00000589823 NXT1Q9UKK6 140 aaKnown RBP12.87□□□□□ -0.35
VMP1-210ENST00000589823 DAPP1Q9UN19 280 aa12.87□□□□□ -0.35
VMP1-210ENST00000589823 FARSAQ9Y285 508 aaKnown RBP12.87□□□□□ -0.35
VMP1-210ENST00000589823 MRPS33Q9Y291 106 aaKnown RBP12.87□□□□□ -0.35
VMP1-210ENST00000589823 PADI2Q9Y2J8 665 aa12.87□□□□□ -0.35
VMP1-210ENST00000589823 SDK2Q58EX2 2172 aa12.87□□□□□ -0.35
VMP1-210ENST00000589823 CACNA1AO00555 2505 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 IGLV3-12A0A075B6K2 115 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 LOC101059948A0A1B0GTJ6 334 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 ZNF195O14628 629 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 DNAJB6O75190 326 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 JAK1P23458 1154 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 TLX1P31314 330 aaPredicted RBP12.86□□□□□ -0.35
VMP1-210ENST00000589823 DLSTP36957 453 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 GSTM5P46439 218 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 TRA2BP62995 288 aaKnown RBP12.86□□□□□ -0.35
VMP1-210ENST00000589823 ERVK-8P63133 956 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 RAE1P78406 368 aaKnown RBP12.86□□□□□ -0.35
VMP1-210ENST00000589823 EMX2Q04743 252 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 ZNF763Q0D2J5 394 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 DNASE1L3Q13609 305 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 TGIF1Q15583 401 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 NKG7Q16617 165 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 SLC9B1Q4ZJI4 515 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 VWA2Q5GFL6 755 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 MFSD4BQ5TF39 518 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 MRM1Q6IN84 353 aaKnown RBP12.86□□□□□ -0.35
VMP1-210ENST00000589823 MRPL14Q6P1L8 145 aaKnown RBP12.86□□□□□ -0.35
VMP1-210ENST00000589823 EPGNQ6UW88 154 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 ENDOVQ8N8Q3 282 aaKnown RBP12.86□□□□□ -0.35
VMP1-210ENST00000589823 FAM47BQ8NA70 645 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 CEP70Q8NHQ1 597 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 SNIP1Q8TAD8 396 aaKnown RBP12.86□□□□□ -0.35
VMP1-210ENST00000589823 STT3BQ8TCJ2 826 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 ACTRT2Q8TDY3 377 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 KCNE4Q8WWG9 221 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 TBC1D20Q96BZ9 403 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 C11orf24Q96F05 449 aaPredicted RBP12.86□□□□□ -0.35
VMP1-210ENST00000589823 NAF1Q96HR8 494 aaKnown RBP12.86□□□□□ -0.35
VMP1-210ENST00000589823 MAELQ96JY0 434 aaKnown RBP12.86□□□□□ -0.35
VMP1-210ENST00000589823 MAPKAP1Q9BPZ7 522 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 EFHD1Q9BUP0 239 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 FAIM2Q9BWQ8 316 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 GPR87Q9BY21 358 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 RBCK1Q9BYM8 510 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 TGIF2Q9GZN2 237 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 WDR55Q9H6Y2 383 aaPredicted RBP12.86□□□□□ -0.35
VMP1-210ENST00000589823 WDR54Q9H977 334 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 NOP53Q9NZM5 478 aaKnown RBP12.86□□□□□ -0.35
VMP1-210ENST00000589823 KCND3Q9UK17 655 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 EIF3LQ9Y262 564 aaKnown RBP12.86□□□□□ -0.35
VMP1-210ENST00000589823 ASB4Q9Y574 426 aa12.86□□□□□ -0.35
VMP1-210ENST00000589823 SCN3AQ9NY46 2000 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 GMNCA6NCL1 334 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 CLDN4O14493 209 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 TLX3O43711 291 aaPredicted RBP12.85□□□□□ -0.35
VMP1-210ENST00000589823 BMP10O95393 424 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 FHP07954 510 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 ZGLP1P0C6A0 271 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 PRR35P0CG20 571 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 NR2F6P10588 404 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 ACPPP15309 386 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 IDH3AP50213 366 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 HNRNPH2P55795 449 aaKnown RBP12.85□□□□□ -0.35
VMP1-210ENST00000589823 TAS2R50P59544 299 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 ERV3-1Q14264 604 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 HEPACAMQ14CZ8 416 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 MINDY4Q4G0A6 757 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 IL23RQ5VWK5 629 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 LARP4Q71RC2 724 aaKnown RBP eCLIP12.85□□□□□ -0.35
VMP1-210ENST00000589823 SPATA19Q7Z5L4 167 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 ZC3H7AQ8IWR0 971 aaKnown RBP12.85□□□□□ -0.35
VMP1-210ENST00000589823 PRSS58Q8IYP2 241 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 RFWD2Q8NHY2 731 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 CDC26Q8NHZ8 85 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 C16orf78Q8WTQ4 265 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 FCRL1Q96LA6 429 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 C1orf50Q9BV19 199 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 DPH1Q9BZG8 443 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 SOX17Q9H6I2 414 aaPredicted RBP12.85□□□□□ -0.35
VMP1-210ENST00000589823 GPN2Q9H9Y4 310 aaPredicted RBP12.85□□□□□ -0.35
VMP1-210ENST00000589823 TCF7L2Q9NQB0 619 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 KCMF1Q9P0J7 381 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 DCTN4Q9UJW0 460 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 PTRH2Q9Y3E5 179 aaKnown RBP12.85□□□□□ -0.35
VMP1-210ENST00000589823 ATG4BQ9Y4P1 393 aa12.85□□□□□ -0.35
VMP1-210ENST00000589823 A0A0G2JND7 137 aa12.84□□□□□ -0.35
VMP1-210ENST00000589823 BLACEA4D250 179 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms