RNA–Protein interactions for RNA: ENST00000589216.1

PTPN2-208, Transcript of protein tyrosine phosphatase, non-receptor type 2, human

TSL 3

Gene PTPN2, Length 646 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN2-208	ENST00000589216	PRDM9	Q9NQV7	894 aa		9.25	□□□□□ -0.93
PTPN2-208	ENST00000589216	KCMF1	Q9P0J7	381 aa		9.25	□□□□□ -0.93
PTPN2-208	ENST00000589216	ZNF225	Q9UK10	706 aa		9.25	□□□□□ -0.93
PTPN2-208	ENST00000589216	ZNF223	Q9UK11	482 aa	Predicted RBP	9.25	□□□□□ -0.93
PTPN2-208	ENST00000589216	DAPP1	Q9UN19	280 aa		9.25	□□□□□ -0.93
PTPN2-208	ENST00000589216	SPTBN1	Q01082	2364 aa	Known RBP	9.25	□□□□□ -0.93
PTPN2-208	ENST00000589216	DOPEY1	Q5JWR5	2465 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	IQANK1	A0A1B0GTG1	560 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	SAGE2P	A6NJ88	616 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216		H0YIV9	168 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	TMPRSS11D	O60235	418 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	DLX3	O60479	287 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	UGDH	O60701	494 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	SMIM24	O75264	130 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	EED	O75530	441 aa	Known RBP	9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	WDPCP	O95876	746 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	UQCRH	P07919	91 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	HIST1H1T	P22492	207 aa	Predicted RBP	9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	ARL1	P40616	181 aa	Predicted RBP	9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	PIK3CB	P42338	1070 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	CCNG1	P51959	295 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	CDH13	P55290	713 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	HNRNPH2	P55795	449 aa	Known RBP	9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	ID2	Q02363	134 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	SRSF11	Q05519	484 aa	Known RBP	9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	ZNF33B	Q06732	778 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	SRSF1	Q07955	248 aa	Known RBP eCLIP	9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	ESPL1	Q14674	2120 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	HIST2H2AC	Q16777	129 aa	Predicted RBP	9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	UNC50	Q53HI1	259 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	DEPDC1	Q5TB30	811 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	LIPJ	Q5W064	366 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	HIST2H2AA3	Q6FI13	130 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	IQCK	Q8N0W5	287 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	CISD2	Q8N5K1	135 aa	Known RBP	9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	NFAM1	Q8NET5	270 aa	Predicted RBP	9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	OR4F6	Q8NGB9	312 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	AEN	Q8WTP8	325 aa	Known RBP	9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	SREK1	Q8WXA9	508 aa	Known RBP	9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	UBE2E3	Q969T4	207 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	SNRNP40	Q96DI7	357 aa	Known RBP	9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	CMTM7	Q96FZ5	175 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	HBEGF	Q99075	208 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	LPAR4	Q99677	370 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	NPL	Q9BXD5	320 aa	Predicted RBP	9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	C1QTNF3	Q9BXJ4	246 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	CLMP	Q9H6B4	373 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	CLK4	Q9HAZ1	481 aa	Known RBP	9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	PRTFDC1	Q9NRG1	225 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	FARSB	Q9NSD9	589 aa	Known RBP	9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	ASF1B	Q9NVP2	202 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	FBXW2	Q9UKT8	454 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	TSC22D4	Q9Y3Q8	395 aa		9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	TNPO3	Q9Y5L0	923 aa	Known RBP	9.24	□□□□□ -0.93
PTPN2-208	ENST00000589216	POLE	Q07864	2286 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216		A0A088AWK7	358 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216		A0A0A6YYD5	115 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216		A0A1W2PS29	197 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216		A8MUI8	341 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	ESPN	B1AK53	854 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	TCP11X1	B4DZS4	312 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	FGF17	O60258	216 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	LDB3	O75112	727 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	MYO1D	O94832	1006 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	OR4F21	O95013	312 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	SLU7	O95391	586 aa	Known RBP	9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	CLDN9	O95484	217 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	GBA	P04062	536 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	ZNF10	P21506	573 aa	Predicted RBP	9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	GNLY	P22749	145 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	SERPINB1	P30740	379 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	BSG	P35613	385 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	HTR6	P50406	440 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	TNFSF10	P50591	281 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	HERVK_113	P63132	956 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	ARG2	P78540	354 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	SLC13A2	Q13183	592 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	MRPL49	Q13405	166 aa	Known RBP	9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	ZNF169	Q14929	603 aa	Predicted RBP	9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	GGTA1P	Q4G0N0	100 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	TMEM35A	Q53FP2	167 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	ZNF678	Q5SXM1	525 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	C18orf63	Q68DL7	685 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	H3F3C	Q6NXT2	135 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	METTL2B	Q6P1Q9	378 aa	Known RBP	9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	TDRP	Q86YL5	185 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	EFCAB3	Q8N7B9	438 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	APCDD1L	Q8NCL9	501 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	DNAJB14	Q8TBM8	379 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	ACMSD	Q8TDX5	336 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	ELP5	Q8TE02	316 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	TRPC4AP	Q8TEL6	797 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	MTFMT	Q96DP5	389 aa	Known RBP	9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	TBCD	Q9BTW9	1192 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	NTMT1	Q9BV86	223 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	ERVK-6	Q9BXR3	956 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	HES7	Q9BYE0	225 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	KCNK13	Q9HB14	408 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	PRM3	Q9NNZ6	103 aa		9.23	□□□□□ -0.93
PTPN2-208	ENST00000589216	MMP25	Q9NPA2	562 aa		9.23	□□□□□ -0.93

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms