RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 CYS1Q717R9 158 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 CENPUQ71F23 418 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 SMIM5Q71RC9 77 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 OTUD6AQ7L8S5 288 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 MIER3Q7Z3K6 550 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 SDCCAG8Q86SQ7 713 aaPredicted RBP3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 EGFL6Q8IUX8 553 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 CEP97Q8IW35 865 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 THNSL1Q8IYQ7 743 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 ARHGAP24Q8N264 748 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 NIPA2Q8N8Q9 360 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 NAT8LQ8N9F0 302 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 BANPQ8N9N5 519 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 RBM15BQ8NDT2 890 aaKnown RBP3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 TMEM161BQ8NDZ6 487 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 RDM1Q8NG50 284 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 TEKT4Q8WW24 435 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 POMGNT1Q8WZA1 660 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 APBB2Q92870 758 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 TAAR8Q969N4 342 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 AZIN2Q96A70 460 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 RBM41Q96IZ5 413 aaKnown RBP3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 C9orf72Q96LT7 481 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 GPATCH1Q9BRR8 931 aaKnown RBP3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 CBWD1Q9BRT8 395 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 LXNQ9BS40 222 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 YIPF3Q9GZM5 350 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 PDZD7Q9H5P4 517 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 ERVMER34-1Q9H9K5 563 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 XAB2Q9HCS7 855 aaKnown RBP3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 SLC35C2Q9NQQ7 365 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 PARVAQ9NVD7 372 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 NDUFA13Q9P0J0 144 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 CPSF2Q9P2I0 782 aaKnown RBP3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 PSMC3IPQ9P2W1 217 aaPredicted RBP3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 TBK1Q9UHD2 729 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 ANAPC7Q9UJX3 599 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 FBXL2Q9UKC9 423 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 R3HDM2Q9Y2K5 976 aaKnown RBP3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 UBIAD1Q9Y5Z9 338 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 STYXL1Q9Y6J8 313 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 PRSS21Q9Y6M0 314 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 LRRC37AA6NMS7 1700 aa3.7□□□□□ -1.82
SMCHD1-208ENST00000583344 MYH11P35749 1972 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 A0A087X002 238 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 H0Y626 953 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 H0YCG3 227 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 TRDMT1O14717 391 aaKnown RBP3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 GYG2O15488 501 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 TBX10O75333 385 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 FKBP6O75344 327 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 ENTPD5O75356 428 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 SPAG7O75391 227 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 SPAG6O75602 509 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 TM7SF2O76062 418 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 STBD1O95210 358 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 ZNF26P17031 533 aaPredicted RBP3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 CRABP2P29373 138 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 HOXA13P31271 388 aaPredicted RBP3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 SFNP31947 248 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 STIP1P31948 543 aaKnown RBP3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 CDH5P33151 784 aaPredicted RBP3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 PIK3CAP42336 1068 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 ARSEP51690 589 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 STAT2P52630 851 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 VCPP55072 806 aaKnown RBP3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 SH3BGRP55822 239 aaPredicted RBP3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 PSMC5P62195 406 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 XIAPP98170 497 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 CYP24A1Q07973 514 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 WASHC5Q12768 1159 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 DYNC1I2Q13409 638 aaKnown RBP3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 PIGHQ14442 188 aaPredicted RBP3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 FGFBP1Q14512 234 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 TMEM187Q14656 261 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 TNIP1Q15025 636 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 TMED2Q15363 201 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 TRIP13Q15645 432 aaPredicted RBP3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 KLHL38Q2WGJ6 581 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 USH1GQ495M9 461 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 ZFP69Q49AA0 526 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 ACSBG2Q5FVE4 666 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 DCST1Q5T197 706 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 KLHL35Q6PF15 583 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 SHQ1Q6PI26 577 aaKnown RBP3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 NCEH1Q6PIU2 408 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 IL27RAQ6UWB1 636 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 C3orf62Q6ZUJ4 267 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 PIWIL4Q7Z3Z4 852 aaKnown RBP3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 NET1Q7Z628 596 aaPredicted RBP3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 CBWD2Q8IUF1 395 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 ADGRF2Q8IZF7 708 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 SCML4Q8N228 414 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 GPD1LQ8N335 351 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 POMGNT2Q8NAT1 580 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 PPFIBP2Q8ND30 876 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 STKLD1Q8NE28 680 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 GOT1L1Q8NHS2 421 aaPredicted RBP3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 THAP6Q8TBB0 222 aa3.69□□□□□ -1.82
SMCHD1-208ENST00000583344 RAB3IL1Q8TBN0 382 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms