RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 GRM6O15303 877 aa14.95□□□□□ -0.02
NUP88-207ENST00000573584 ATG13O75143 517 aa14.95□□□□□ -0.02
NUP88-207ENST00000573584 ENTPD6O75354 484 aa14.95□□□□□ -0.02
NUP88-207ENST00000573584 SLITRK5O94991 958 aa14.95□□□□□ -0.02
NUP88-207ENST00000573584 PTPN2P17706 415 aa14.95□□□□□ -0.02
NUP88-207ENST00000573584 POLR2EP19388 210 aaKnown RBP14.95□□□□□ -0.02
NUP88-207ENST00000573584 TAS2R50P59544 299 aa14.95□□□□□ -0.02
NUP88-207ENST00000573584 DUSP7Q16829 419 aa14.95□□□□□ -0.02
NUP88-207ENST00000573584 C6orf183Q5T699 404 aa14.95□□□□□ -0.02
NUP88-207ENST00000573584 C16orf78Q8WTQ4 265 aa14.95□□□□□ -0.02
NUP88-207ENST00000573584 TIFAQ96CG3 184 aa14.95□□□□□ -0.02
NUP88-207ENST00000573584 OPALINQ96PE5 141 aa14.95□□□□□ -0.02
NUP88-207ENST00000573584 SMG9Q9H0W8 520 aaKnown RBP14.95□□□□□ -0.02
NUP88-207ENST00000573584 H3BM21 787 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 H3BQ06 376 aaPredicted RBP14.94□□□□□ -0.02
NUP88-207ENST00000573584 CYP7B1O75881 506 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 URODP06132 367 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 SRPRAP08240 638 aaKnown RBP14.94□□□□□ -0.02
NUP88-207ENST00000573584 CYP2A6P11509 494 aaPredicted RBP14.94□□□□□ -0.02
NUP88-207ENST00000573584 GJA1P17302 382 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 PBLDP30039 288 aaPredicted RBP14.94□□□□□ -0.02
NUP88-207ENST00000573584 VIPR1P32241 457 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 RPS19P39019 145 aaKnown RBP14.94□□□□□ -0.02
NUP88-207ENST00000573584 PCBP3P57721 371 aaKnown RBP14.94□□□□□ -0.02
NUP88-207ENST00000573584 LEXMQ3ZCV2 418 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 TMC5Q6UXY8 1006 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 NRARPQ7Z6K4 114 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 MMAAQ8IVH4 418 aaKnown RBP14.94□□□□□ -0.02
NUP88-207ENST00000573584 TRAM1L1Q8N609 369 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 TMEM169Q96HH4 297 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 C3orf14Q9HBI5 128 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 SMURF1Q9HCE7 757 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 C11orf16Q9NQ32 467 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 TBC1D24Q9ULP9 559 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 A0A1W2PRB8 838 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 SLC5A10A0PJK1 596 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 QSOX1O00391 747 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 SCG5P05408 212 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 ARAFP10398 606 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 CKMT1AP12532 417 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 SOX3P41225 446 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 HTR3AP46098 478 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 ALDH9A1P49189 494 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 SLC7A9P82251 487 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.94□□□□□ -0.02
NUP88-207ENST00000573584 PDE7AQ13946 482 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 SLBPQ14493 270 aaKnown RBP eCLIP14.94□□□□□ -0.02
NUP88-207ENST00000573584 LHX8Q68G74 356 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 ASTLQ6HA08 431 aaPredicted RBP14.94□□□□□ -0.02
NUP88-207ENST00000573584 ZNF544Q6NX49 715 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 BRAT1Q6PJG6 821 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.94□□□□□ -0.02
NUP88-207ENST00000573584 KRT73Q86Y46 540 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 OR2A12Q8NGT7 310 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 VANGL1Q8TAA9 524 aaPredicted RBP14.94□□□□□ -0.02
NUP88-207ENST00000573584 ZNF480Q8WV37 535 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 MYLIPQ8WY64 445 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 SLX1AQ9BQ83 275 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 MARCH7Q9H992 704 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 HHATLQ9HCP6 504 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 ZNF221Q9UK13 617 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 TRAPPC4Q9Y296 219 aa14.94□□□□□ -0.02
NUP88-207ENST00000573584 KRT75O95678 551 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 KLK1P06870 262 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 NPPBP16860 134 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 RPL3P39023 403 aaKnown RBP14.93□□□□□ -0.02
NUP88-207ENST00000573584 DCDC1P59894 354 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 E2F2Q14209 437 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 HENMT1Q5T8I9 393 aaKnown RBP14.93□□□□□ -0.02
NUP88-207ENST00000573584 SLX4IPQ5VYV7 408 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 ZNF770Q6IQ21 691 aaPredicted RBP14.93□□□□□ -0.02
NUP88-207ENST00000573584 SLC34A3Q8N130 599 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 LMNTD1Q8N9Z9 388 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 OR6F1Q8NGZ6 308 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 BTN2A2Q8WVV5 523 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 TMCO6Q96DC7 493 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 OR2A14Q96R47 310 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 ZSCAN5AQ9BUG6 496 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 TPK1Q9H3S4 243 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 RC3H2Q9HBD1 1191 aaKnown RBP14.93□□□□□ -0.02
NUP88-207ENST00000573584 NPAP1Q9NZP6 1156 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 CLEC2DQ9UHP7 191 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 SH2B3Q9UQQ2 575 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 TLR4O00206 839 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 LEFTY2O00292 366 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 FOXE1O00358 373 aaPredicted RBP14.93□□□□□ -0.02
NUP88-207ENST00000573584 PIPP12273 146 aaPredicted RBP14.93□□□□□ -0.02
NUP88-207ENST00000573584 FEN1P39748 380 aaKnown RBP14.93□□□□□ -0.02
NUP88-207ENST00000573584 RECQLP46063 649 aaPredicted RBP14.93□□□□□ -0.02
NUP88-207ENST00000573584 GJA8P48165 433 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 ATN1P54259 1190 aaPredicted RBP14.93□□□□□ -0.02
NUP88-207ENST00000573584 PNLIPRP1P54315 467 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 TBPL1P62380 186 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 PUM1Q14671 1186 aaKnown RBP eCLIP14.93□□□□□ -0.02
NUP88-207ENST00000573584 PRSS53Q2L4Q9 553 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 FAM71E1Q6IPT2 247 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 UBQLNLQ8IYU4 475 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 DMRT3Q9NQL9 472 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 TRBV4-1A0A0J9YWV2 114 aa14.93□□□□□ -0.02
NUP88-207ENST00000573584 CXorf51AA0A1B0GTR3 108 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms