RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 KRTAP3-3Q9BYR6 98 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 KRTAP3-2Q9BYR7 98 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 PRDM9Q9NQV7 894 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 SMYD2Q9NRG4 433 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 DEPPQ9NTK1 212 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 MOCS1Q9NZB8 636 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 CORO1CQ9ULV4 474 aaPredicted RBP6.27□□□□□ -1.41
VPS53-213ENST00000572334 SNX12Q9UMY4 172 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 CHMP2BQ9UQN3 213 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 CAPN7Q9Y6W3 813 aa6.27□□□□□ -1.41
VPS53-213ENST00000572334 ANKHD1Q8IWZ3 2542 aaKnown RBP6.27□□□□□ -1.41
VPS53-213ENST00000572334 MAP1AP78559 2803 aaPredicted RBP6.26□□□□□ -1.41
VPS53-213ENST00000572334 DOCK7Q96N67 2140 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 A0A0G2JMM0 328 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 A0A0G2JN53 185 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 A0A1W2PPB8 328 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 A0A1W2PRS3 328 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 LRIT2A6NDA9 550 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 NPEPPSL1A6NEC2 478 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 KIR3DP1A8MWS1 328 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 E9PLN8 166 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 FANCGO15287 622 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 TAPBPO15533 448 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 HS6ST1O60243 411 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 ZNF354AO60765 605 aaPredicted RBP6.26□□□□□ -1.41
VPS53-213ENST00000572334 PIAS1O75925 651 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 SNUPNO95149 360 aaKnown RBP6.26□□□□□ -1.41
VPS53-213ENST00000572334 C1QAP02745 245 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 RNH1P13489 461 aaKnown RBP6.26□□□□□ -1.41
VPS53-213ENST00000572334 ZNF24P17028 368 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 IGFBP2P18065 325 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 EPORP19235 508 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 TFEBP19484 476 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 CD22P20273 847 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 JAK1P23458 1154 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 GDF5P43026 501 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 CYB561P49447 251 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 MEOX1P50221 254 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 TAS2R39P59534 338 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 TAS2R50P59544 299 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 CDKL1Q00532 357 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 RGS1Q08116 209 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 CBLBQ13191 982 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 MORF4L2Q15014 288 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 PPP1R7Q15435 360 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 TSNQ15631 228 aaKnown RBP6.26□□□□□ -1.41
VPS53-213ENST00000572334 ADPRMQ3LIE5 342 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 XKR6Q5GH73 641 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 TOR1AIP1Q5JTV8 583 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 CCDC121Q6ZUS5 278 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 ABHD13Q7L211 337 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 PALM2Q8IXS6 379 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 CYP4X1Q8N118 509 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 ZFP62Q8NB50 900 aaPredicted RBP6.26□□□□□ -1.41
VPS53-213ENST00000572334 TRPV3Q8NET8 790 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 B3GNT7Q8NFL0 401 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 OR52N2Q8NGI0 321 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 ATL1Q8WXF7 558 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 RHBDF1Q96CC6 855 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 MS4A6EQ96DS6 147 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 C14orf79Q96F83 325 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 CFAP36Q96G28 342 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 MAGED4Q96JG8 741 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 CSF3RQ99062 836 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 NAP1L3Q99457 506 aaPredicted RBP6.26□□□□□ -1.41
VPS53-213ENST00000572334 SPOCK3Q9BQ16 436 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 VKORC1Q9BQB6 163 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 TMEM79Q9BSE2 394 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 NAT9Q9BTE0 207 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 LIN28AQ9H9Z2 209 aaKnown RBP6.26□□□□□ -1.41
VPS53-213ENST00000572334 CLK4Q9HAZ1 481 aaKnown RBP6.26□□□□□ -1.41
VPS53-213ENST00000572334 NPDC1Q9NQX5 325 aaPredicted RBP6.26□□□□□ -1.41
VPS53-213ENST00000572334 ASIC3Q9UHC3 531 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 ZNF490Q9ULM2 529 aaPredicted RBP6.26□□□□□ -1.41
VPS53-213ENST00000572334 MMACHCQ9Y4U1 282 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 OARD1Q9Y530 152 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 NF1P21359 2839 aa6.26□□□□□ -1.41
VPS53-213ENST00000572334 TRBV11-1A0A0K0K1C0 115 aa6.25□□□□□ -1.41
VPS53-213ENST00000572334 A0A1B0GTH9 108 aa6.25□□□□□ -1.41
VPS53-213ENST00000572334 FAM95CA0A1B0GW59 222 aa6.25□□□□□ -1.41
VPS53-213ENST00000572334 CXorf49A8MYA2 514 aaPredicted RBP6.25□□□□□ -1.41
VPS53-213ENST00000572334 E7ESA3 106 aa6.25□□□□□ -1.41
VPS53-213ENST00000572334 CYR61O00622 381 aa6.25□□□□□ -1.41
VPS53-213ENST00000572334 PEX1O43933 1283 aa6.25□□□□□ -1.41
VPS53-213ENST00000572334 ITGA10O75578 1167 aa6.25□□□□□ -1.41
VPS53-213ENST00000572334 MYO1DO94832 1006 aa6.25□□□□□ -1.41
VPS53-213ENST00000572334 C1GALT1C1LP0DN25 315 aa6.25□□□□□ -1.41
VPS53-213ENST00000572334 ESRRAP11474 423 aaPredicted RBP6.25□□□□□ -1.41
VPS53-213ENST00000572334 ABOP16442 354 aa6.25□□□□□ -1.41
VPS53-213ENST00000572334 GGT5P36269 586 aa6.25□□□□□ -1.41
VPS53-213ENST00000572334 GMPRP36959 345 aa6.25□□□□□ -1.41
VPS53-213ENST00000572334 CCT5P48643 541 aa6.25□□□□□ -1.41
VPS53-213ENST00000572334 SMSP52788 366 aa6.25□□□□□ -1.41
VPS53-213ENST00000572334 CASP6P55212 293 aa6.25□□□□□ -1.41
VPS53-213ENST00000572334 RAB38P57729 211 aa6.25□□□□□ -1.41
VPS53-213ENST00000572334 GPR85P60893 370 aa6.25□□□□□ -1.41
VPS53-213ENST00000572334 BTN3A2P78410 334 aa6.25□□□□□ -1.41
VPS53-213ENST00000572334 DYNC1I2Q13409 638 aaKnown RBP6.25□□□□□ -1.41
VPS53-213ENST00000572334 TMED1Q13445 227 aa6.25□□□□□ -1.41
VPS53-213ENST00000572334 FBXO48Q5FWF7 155 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms