RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 GSTM2P28161 218 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 PCBP3P57721 371 aaKnown RBP19.31■□□□□ 0.68
CLN3-230ENST00000568076 ZNF630Q2M218 657 aaPredicted RBP19.31■□□□□ 0.68
CLN3-230ENST00000568076 CRB2Q5IJ48 1285 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 TBC1D3GQ6DHY5 549 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 TBC1D3CQ6IPX1 549 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 NUDT13Q86X67 352 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 TBC1D3Q8IZP1 549 aaPredicted RBP19.31■□□□□ 0.68
CLN3-230ENST00000568076 TTC29Q8NA56 475 aaPredicted RBP19.31■□□□□ 0.68
CLN3-230ENST00000568076 BPIFB6Q8NFQ5 453 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 OR52E1Q8NGJ3 308 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 OR2L8Q8NGY9 312 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 CREB3L4Q8TEY5 395 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 COG8Q96MW5 612 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 RUBCNLQ9H714 662 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 KRT84Q9NSB2 600 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 TEX10Q9NXF1 929 aaPredicted RBP19.31■□□□□ 0.68
CLN3-230ENST00000568076 KIF17Q9P2E2 1029 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 NDRG4Q9ULP0 352 aaKnown RBP19.31■□□□□ 0.68
CLN3-230ENST00000568076 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.31■□□□□ 0.68
CLN3-230ENST00000568076 TESMINQ9Y4I5 508 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 LYVE1Q9Y5Y7 322 aa19.31■□□□□ 0.68
CLN3-230ENST00000568076 A0A0G2JN53 185 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 SLC31A1O15431 190 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 EGFP01133 1207 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 PCBP4P57723 403 aaKnown RBP19.3■□□□□ 0.68
CLN3-230ENST00000568076 TOP3AQ13472 1001 aaPredicted RBP19.3■□□□□ 0.68
CLN3-230ENST00000568076 ELOAQ14241 798 aaKnown RBP19.3■□□□□ 0.68
CLN3-230ENST00000568076 HEPACAMQ14CZ8 416 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 CYP27C1Q4G0S4 372 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 ZNF566Q969W8 418 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 RGMAQ96B86 450 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 CNDP2Q96KP4 475 aaKnown RBP19.3■□□□□ 0.68
CLN3-230ENST00000568076 TEFMQ96QE5 360 aaKnown RBP19.3■□□□□ 0.68
CLN3-230ENST00000568076 LHPPQ9H008 270 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 RAD21L1Q9H4I0 556 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 LMCD1Q9NZU5 365 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 SCHIP1Q9P0W5 487 aaPredicted RBP19.3■□□□□ 0.68
CLN3-230ENST00000568076 BLOC1S6Q9UL45 172 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 WBP11Q9Y2W2 641 aaKnown RBP19.3■□□□□ 0.68
CLN3-230ENST00000568076 PCDHGB3Q9Y5G1 929 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 SNX11Q9Y5W9 270 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 CEP290O15078 2479 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 HEATR5BQ9P2D3 2071 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 PDZK1P1A8MUH7 402 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 E9PQ18 207 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 PDPK1O15530 556 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 XPNPEP2O43895 674 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 B4GALT2O60909 372 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 SEC14L2O76054 403 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 HOXB3P14651 431 aaPredicted RBP19.3■□□□□ 0.68
CLN3-230ENST00000568076 RPS26P62854 115 aaKnown RBP19.3■□□□□ 0.68
CLN3-230ENST00000568076 UAP1L1Q3KQV9 507 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 IFI44LQ53G44 452 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 SAXO2Q658L1 398 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 GTF2IRD2BQ6EKJ0 949 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 GTF2IRD2Q86UP8 949 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 CCDC71Q8IV32 467 aaPredicted RBP19.3■□□□□ 0.68
CLN3-230ENST00000568076 OR5P2Q8WZ92 322 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 QRFPRQ96P65 431 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 NLNQ9BYT8 704 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 FGF22Q9HCT0 170 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 NAALAD2Q9Y3Q0 740 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 ZNF451Q9Y4E5 1061 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 GMPPBQ9Y5P6 360 aa19.3■□□□□ 0.68
CLN3-230ENST00000568076 PRICKLE3O43900 615 aaPredicted RBP19.29■□□□□ 0.68
CLN3-230ENST00000568076 CLEC3AO75596 197 aa19.29■□□□□ 0.68
CLN3-230ENST00000568076 KLF8O95600 359 aaPredicted RBP19.29■□□□□ 0.68
CLN3-230ENST00000568076 ANGPTL1O95841 491 aa19.29■□□□□ 0.68
CLN3-230ENST00000568076 STATHP02808 62 aa19.29■□□□□ 0.68
CLN3-230ENST00000568076 CCDC159P0C7I6 412 aa19.29■□□□□ 0.68
CLN3-230ENST00000568076 HOXB2P14652 356 aa19.29■□□□□ 0.68
CLN3-230ENST00000568076 BCL6P41182 706 aa19.29■□□□□ 0.68
CLN3-230ENST00000568076 FRKP42685 505 aaPredicted RBP19.29■□□□□ 0.68
CLN3-230ENST00000568076 PLA2G16P53816 162 aa19.29■□□□□ 0.68
CLN3-230ENST00000568076 MANFP55145 182 aaKnown RBP19.29■□□□□ 0.68
CLN3-230ENST00000568076 DSTNP60981 165 aa19.29■□□□□ 0.68
CLN3-230ENST00000568076 GRSF1Q12849 480 aaKnown RBP eCLIP19.29■□□□□ 0.68
CLN3-230ENST00000568076 RAB30Q15771 203 aa19.29■□□□□ 0.68
CLN3-230ENST00000568076 B3GNT8Q7Z7M8 397 aa19.29■□□□□ 0.68
CLN3-230ENST00000568076 SETD9Q8NE22 299 aa19.29■□□□□ 0.68
CLN3-230ENST00000568076 EXOSC8Q96B26 276 aaKnown RBP19.29■□□□□ 0.68
CLN3-230ENST00000568076 NEURL3Q96EH8 262 aa19.29■□□□□ 0.68
CLN3-230ENST00000568076 SCARF2Q96GP6 870 aaPredicted RBP19.29■□□□□ 0.68
CLN3-230ENST00000568076 SH3GL3Q99963 347 aa19.29■□□□□ 0.68
CLN3-230ENST00000568076 DDX31Q9H8H2 851 aaKnown RBP19.29■□□□□ 0.68
CLN3-230ENST00000568076 SLC6A20Q9NP91 592 aa19.29■□□□□ 0.68
CLN3-230ENST00000568076 SIRT3Q9NTG7 399 aaPredicted RBP19.29■□□□□ 0.68
CLN3-230ENST00000568076 LRIT2A6NDA9 550 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 PTGES3LE9PB15 166 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 PRAMEF10O60809 474 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 SERPIND1P05546 499 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 PEBP1P30086 187 aaKnown RBP19.28■□□□□ 0.68
CLN3-230ENST00000568076 FMO3P31513 532 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 CTHP32929 405 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 RPS6KA3P51812 740 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 KRT33BQ14525 404 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 RPE65Q16518 533 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 OR4C11Q6IEV9 310 aa19.28■□□□□ 0.68
CLN3-230ENST00000568076 ZNF793Q6ZN11 406 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms