RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 GLRA3O75311 464 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 OTCP00480 354 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 RPS17P08708 135 aaKnown RBP12.57□□□□□ -0.4
CLK3-216ENST00000564468 ITGAMP11215 1152 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 PYGBP11216 843 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 HIST1H1TP22492 207 aaPredicted RBP12.57□□□□□ -0.4
CLK3-216ENST00000564468 ATP5F1P24539 256 aaPredicted RBP12.57□□□□□ -0.4
CLK3-216ENST00000564468 ATP5A1P25705 553 aaKnown RBP12.57□□□□□ -0.4
CLK3-216ENST00000564468 CERS1P27544 350 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 SLC26A5P58743 744 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 ARG2P78540 354 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 BTG2P78543 158 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 IFT88Q13099 833 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 SLC13A2Q13183 592 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 CUL3Q13618 768 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 ZRSR2Q15696 482 aaKnown RBP12.57□□□□□ -0.4
CLK3-216ENST00000564468 B3GNTL1Q67FW5 361 aaPredicted RBP12.57□□□□□ -0.4
CLK3-216ENST00000564468 TTC19Q6DKK2 380 aaPredicted RBP12.57□□□□□ -0.4
CLK3-216ENST00000564468 OR4C11Q6IEV9 310 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 MILR1Q7Z6M3 343 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 ZGRF1Q86YA3 2104 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 SIRT6Q8N6T7 355 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 ACOT4Q8N9L9 421 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 MYRIPQ8NFW9 859 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 PSMF1Q92530 271 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 HAS2Q92819 552 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 MIB2Q96AX9 1013 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 CCDC126Q96EE4 140 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 MTERF1Q99551 399 aaKnown RBP12.57□□□□□ -0.4
CLK3-216ENST00000564468 SLC29A3Q9BZD2 475 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 RNF32Q9H0A6 362 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 ZBTB20Q9HC78 741 aaPredicted RBP12.57□□□□□ -0.4
CLK3-216ENST00000564468 DMRT3Q9NQL9 472 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 TMEM216Q9P0N5 145 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 STK38LQ9Y2H1 464 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 RNF11Q9Y3C5 154 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 SPTBN1Q01082 2364 aaKnown RBP12.57□□□□□ -0.4
CLK3-216ENST00000564468 CREBBPQ92793 2442 aa12.57□□□□□ -0.4
CLK3-216ENST00000564468 IGKV3D-11A0A0A0MRZ8 115 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 SAGE2PA6NJ88 616 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 GOLGA8RI6L899 631 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 OR7A17O14581 309 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 CTNSO60931 367 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 VPS4BO75351 444 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 SCELO95171 688 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 SHBGP04278 402 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 MAOAP21397 527 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 TLX1P31314 330 aaPredicted RBP12.56□□□□□ -0.4
CLK3-216ENST00000564468 CCT5P48643 541 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 CD97P48960 835 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 NAA20P61599 178 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 RPS13P62277 151 aaKnown RBP12.56□□□□□ -0.4
CLK3-216ENST00000564468 VSNL1P62760 191 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 HERVK_113P63132 956 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 BIKQ13323 160 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 ZNF169Q14929 603 aaPredicted RBP12.56□□□□□ -0.4
CLK3-216ENST00000564468 TERF2Q15554 542 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 INPP5JQ15735 1006 aaPredicted RBP12.56□□□□□ -0.4
CLK3-216ENST00000564468 MEP1AQ16819 746 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 GGTA1PQ4G0N0 100 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 H3F3CQ6NXT2 135 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 WDR93Q6P2C0 686 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 EMBQ6PCB8 327 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 SCUBE1Q8IWY4 988 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 SHISA5Q8N114 240 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 RIBC1Q8N443 379 aaPredicted RBP12.56□□□□□ -0.4
CLK3-216ENST00000564468 TMEM151AQ8N4L1 468 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 SLC5A8Q8N695 610 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 Q8NA96 180 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 OR52B6Q8NGF0 335 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 SUN3Q8TAQ9 357 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 WDR20Q8TBZ3 569 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 ZNF483Q8TF39 744 aaPredicted RBP12.56□□□□□ -0.4
CLK3-216ENST00000564468 MZB1Q8WU39 189 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 CNDP1Q96KN2 507 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 SERPINI1Q99574 410 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 ERVK-6Q9BXR3 956 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 OR51B5Q9H339 312 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 ZBTB26Q9HCK0 441 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 SEMA4BQ9NPR2 832 aaPredicted RBP12.56□□□□□ -0.4
CLK3-216ENST00000564468 NECTIN3Q9NQS3 549 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 STMN3Q9NZ72 180 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 AHSPQ9NZD4 102 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 MAP10Q9P2G4 905 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 PHF11Q9UIL8 331 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 GRID1Q9ULK0 1009 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 VPS4AQ9UN37 437 aa12.56□□□□□ -0.4
CLK3-216ENST00000564468 TRAV17A0A0B4J275 112 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 A8MUI8 341 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 CYR61O00622 381 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 SH3BGRLO75368 114 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 SUPT7LO94864 414 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 MLYCDO95822 493 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 CELA2AP08217 269 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 SBK3P0C264 359 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 IMPDH1P20839 514 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 CPN2P22792 545 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 HSD17B3P37058 310 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 SLCO1A2P46721 670 aa12.55□□□□□ -0.4
CLK3-216ENST00000564468 CLCQ05315 142 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms