RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 OR4C11Q6IEV9 310 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 MILR1Q7Z6M3 343 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 ZGRF1Q86YA3 2104 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 SIRT6Q8N6T7 355 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 ACOT4Q8N9L9 421 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 MYRIPQ8NFW9 859 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 PSMF1Q92530 271 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 HAS2Q92819 552 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 MIB2Q96AX9 1013 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 CCDC126Q96EE4 140 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 MTERF1Q99551 399 aaKnown RBP12.57□□□□□ -0.4
CLK3-213ENST00000563842 SLC29A3Q9BZD2 475 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 RNF32Q9H0A6 362 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 CLMPQ9H6B4 373 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 ZBTB20Q9HC78 741 aaPredicted RBP12.57□□□□□ -0.4
CLK3-213ENST00000563842 DMRT3Q9NQL9 472 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 TMEM216Q9P0N5 145 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 STK38LQ9Y2H1 464 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 RNF11Q9Y3C5 154 aa12.57□□□□□ -0.4
CLK3-213ENST00000563842 IGKV3D-11A0A0A0MRZ8 115 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 SAGE2PA6NJ88 616 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 GOLGA8RI6L899 631 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 OR7A17O14581 309 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 CTNSO60931 367 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 VPS4BO75351 444 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 SCELO95171 688 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 SHBGP04278 402 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 MAOAP21397 527 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 TLX1P31314 330 aaPredicted RBP12.56□□□□□ -0.4
CLK3-213ENST00000563842 CCT5P48643 541 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 CD97P48960 835 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 NAA20P61599 178 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 RPS13P62277 151 aaKnown RBP12.56□□□□□ -0.4
CLK3-213ENST00000563842 VSNL1P62760 191 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 HERVK_113P63132 956 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 BIKQ13323 160 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 ZNF169Q14929 603 aaPredicted RBP12.56□□□□□ -0.4
CLK3-213ENST00000563842 TERF2Q15554 542 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 INPP5JQ15735 1006 aaPredicted RBP12.56□□□□□ -0.4
CLK3-213ENST00000563842 MEP1AQ16819 746 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 GGTA1PQ4G0N0 100 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 H3F3CQ6NXT2 135 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 WDR93Q6P2C0 686 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 EMBQ6PCB8 327 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 SCUBE1Q8IWY4 988 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 SHISA5Q8N114 240 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 RIBC1Q8N443 379 aaPredicted RBP12.56□□□□□ -0.4
CLK3-213ENST00000563842 TMEM151AQ8N4L1 468 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 SLC5A8Q8N695 610 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 Q8NA96 180 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 OR52B6Q8NGF0 335 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 SUN3Q8TAQ9 357 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 WDR20Q8TBZ3 569 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 ZNF483Q8TF39 744 aaPredicted RBP12.56□□□□□ -0.4
CLK3-213ENST00000563842 MZB1Q8WU39 189 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 CNDP1Q96KN2 507 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 SERPINI1Q99574 410 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 ERVK-6Q9BXR3 956 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 OR51B5Q9H339 312 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 ZBTB26Q9HCK0 441 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 SEMA4BQ9NPR2 832 aaPredicted RBP12.56□□□□□ -0.4
CLK3-213ENST00000563842 NECTIN3Q9NQS3 549 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 STMN3Q9NZ72 180 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 AHSPQ9NZD4 102 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 MAP10Q9P2G4 905 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 PHF11Q9UIL8 331 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 GRID1Q9ULK0 1009 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 VPS4AQ9UN37 437 aa12.56□□□□□ -0.4
CLK3-213ENST00000563842 TRAV17A0A0B4J275 112 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 A8MUI8 341 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 CYR61O00622 381 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 SH3BGRLO75368 114 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 SUPT7LO94864 414 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 MLYCDO95822 493 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 CELA2AP08217 269 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 SBK3P0C264 359 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 IMPDH1P20839 514 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 CPN2P22792 545 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 HSD17B3P37058 310 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 SLCO1A2P46721 670 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 CLCQ05315 142 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 ZNF33BQ06732 778 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 STX4Q12846 297 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 TRAF3Q13114 568 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 SERTAD2Q14140 314 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 CCDC153Q494R4 210 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 FRG2Q64ET8 278 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 RPUSD3Q6P087 351 aaKnown RBP12.55□□□□□ -0.4
CLK3-213ENST00000563842 ZNF793Q6ZN11 406 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 UBE3DQ7Z6J8 389 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 LGI4Q8N135 537 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 ZCCHC7Q8N3Z6 543 aaKnown RBP12.55□□□□□ -0.4
CLK3-213ENST00000563842 FAM47BQ8NA70 645 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 GALNT11Q8NCW6 608 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 OR4F6Q8NGB9 312 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 NSUN5Q96P11 429 aaKnown RBP12.55□□□□□ -0.4
CLK3-213ENST00000563842 CDK15Q96Q40 435 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 FRG2BQ96QU4 278 aa12.55□□□□□ -0.4
CLK3-213ENST00000563842 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.55□□□□□ -0.4
CLK3-213ENST00000563842 ELOVL6Q9H5J4 265 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms